myRT

myRT report for GCA_013347285.1_ASM1334728v1

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Seq: CP054622.1 Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence (305146 bp)
Overview 1 RT 1: 25184-29962 bp 2 RT 2: 37441-45052 bp Neighborhood of RT #1 [25184, 29962] InsE COG3464 RVT_N RVT-GII GIIM HNHc COG3464 Neighborhood of RT #2 [37441, 45387] Tnp_DNA_bind Dimer_Tnp_Tn5 COG3464 RVT_N RVT-GII GIIM HNHc COG3464 rve Mu-transpos_C Feature: gene Location: 25184-25681 bp Ori: QKS54576.1 Feature: domain Description: InsE Location: 25274-25460 bp Feature: domain Description: InsE Location: 25274-25460 bp Feature: gene Location: 25657-26574 bp Feature: domain Description: COG3464 Location: 25696-26566 bp Feature: domain Description: COG3464 Location: 25696-26566 bp Feature: gene Location: 26647-28314 bp Ori: QKS54577.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26695-26941 bp Feature: domain Description: RVT_N Location: 26695-26941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26986-27646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26986-27646 bp Feature: domain Description: GIIM Note: maturase Location: 27706-27931 bp Feature: domain Description: GIIM Note: maturase Location: 27706-27931 bp Feature: domain Description: HNHc Note: nucleases Location: 28105-28282 bp Feature: domain Description: HNHc Note: nucleases Location: 281 05-28282 bp Feature: gene Location: 28927-29619 bp Feature: domain Description: COG3464 Location: 28990-29617 bp Feature: domain Description: COG3464 Location: 28990-2961 7 bp Feature: gene Location: 29729-29962 bp Feature: gene Location: 37441-38862 bp Ori: QKS54583.1 Feature: domain Description: Tnp_DNA_bind Location: 37462-37633 bp Feature: domain Description: Tnp_DNA_bind Location: 37462-37633 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 38566-38839 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 38566-38839 bp Feature: gene Location: 39309-40226 bp Feature: domain Description: COG3464 Location: 39486-40215 bp Feature: domain Description: COG3464 Location: 39486-4021 5 bp Feature: gene Location: 40299-41966 bp Ori: QKS54584.1 Gene: ltrA Feature: domain Description: RVT_N Location: 40347-40593 bp Feature: domain Description: RVT_N Location: 40347-40593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40638-41298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40638-41 298 bp Feature: domain Description: GIIM Note: maturase Location: 41358-41583 bp Feature: domain Description: GIIM Note: maturase Location: 41 358-41 583 bp Feature: domain Description: HNHc Note: nucleases Location: 41757-41934 bp Feature: domain Description: HNHc Note: nucleases Location: 41 757-41 934 bp Feature: gene Location: 42579-43151 bp Feature: domain Description: COG3464 Location: 42600-43149 bp Feature: domain Description: COG3464 Location: 42600-431 49 bp Feature: gene Location: 43705-45387 bp Ori: QKS54585.1 Feature: domain Description: rve Location: 44227-44641 bp Feature: domain Description: rve Location: 44227-44641 bp Feature: domain Description: Mu-transpos_C Location: 44881-45052 bp Feature: domain Description: Mu-transpos_C Location: 44881 -45052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), COG3464 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281), rve (pfam00665), Mu-transpos_C (pfam09299)