myRT

myRT report for GCA_013348825.1_ASM1334882v1

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Seq: CP054657.1 Lactobacillus reuteri strain AN417 chromosome, complete genome (2069421 bp)
Overview 1 RT 1: 612007-616572 bp 2 RT 2: 622099-628848 bp 3 RT 3: 1169166-1175095 bp 4 RT 4: 1970409-1976372 bp Neighborhood of RT #1 [612007, 616572] TnpB_IS66 RVT-GII GIIM KxYKxGKxW COG5263 COG5263 Spr Neighborhood of RT #2 [622099, 628853] COG5617 RVT-GII GIIM Cps2a prfC Neighborhood of RT #3 [1169166, 1175121] RNase_HI_like RlmL RVT-GII GIIM PRK02551 COG3464 Neighborhood of RT #4 [1970409, 1976767] GanB RVT-GII GIIM PRK10884 Feature: gene Location: 612007-612363 bp Ori: QKT14896.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 612037-612313 bp Feature: domain Description: TnpB_IS66 Location: 61 2037-61 231 3 bp Feature: gene Location: 612353-612541 bp Feature: gene Location: 613065-614309 bp Ori: QKT16182.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613245-613863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 3245-61 3863 bp Feature: domain Description: GIIM Note: maturase Location: 613917-614145 bp Feature: domain Description: GIIM Note: maturase Location: 61 391 7-61 41 45 bp Feature: gene Location: 614595-615920 bp Ori: QKT14898.1 Feature: domain Description: KxYKxGKxW Location: 614607-614670 bp Feature: domain Description: KxYKxGKxW Location: 61 4607-61 4670 bp Feature: domain Description: COG5263 Location: 614772-615225 bp Feature: domain Description: COG5263 Location: 61 4772-61 5225 bp Feature: domain Description: COG5263 Location: 615267-615546 bp Feature: domain Description: COG5263 Location: 61 5267-61 5546 bp Feature: domain Description: Spr Location: 615576-615876 bp Feature: domain Description: Spr Location: 61 5576-61 5876 bp Feature: gene Location: 616000-616572 bp Feature: gene Location: 622099-623655 bp Ori: QKT14903.1 Feature: domain Description: COG5617 Location: 622135-623236 bp Feature: domain Description: COG561 7 Location: 6221 35-623236 bp Feature: gene Location: 624173-624391 bp Feature: gene Location: 624288-625505 bp Ori: QKT14905.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624441-625059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624441 -625059 bp Feature: domain Description: GIIM Note: maturase Location: 625113-625341 bp Feature: domain Description: GIIM Note: maturase Location: 6251 1 3-625341 bp Feature: gene Location: 625620-627089 bp Ori: QKT14906.1 Feature: domain Description: Cps2a Location: 625827-626727 bp Feature: domain Description: Cps2a Location: 625827-626727 bp Feature: gene Location: 627276-628853 bp Ori: QKT14907.1 Feature: domain Description: prfC Location: 627291-628848 bp Feature: domain Description: prfC Location: 627291 -628848 bp Feature: gene Location: 1169166-1169561 bp Ori: QKT15399.1 Feature: domain Description: RNase_HI_like Location: 1169172-1169547 bp Feature: domain Description: RNase_HI_like Location: 1 1 691 72-1 1 69547 bp Feature: gene Location: 1169745-1170899 bp Ori: QKT15400.1 Feature: domain Description: RlmL Location: 1169754-1170870 bp Feature: domain Description: RlmL Location: 1 1 69754-1 1 70870 bp Feature: gene Location: 1171061-1172443 bp Ori: QKT15401.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1171379-1171997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 379-1 1 71 997 bp Feature: domain Description: GIIM Note: maturase Location: 1172051-1172279 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 72051 -1 1 72279 bp Feature: gene Location: 1172960-1173436 bp Ori: QKT15402.1 Feature: domain Description: PRK02551 Location: 1172972-1173425 bp Feature: domain Description: PRK02551 Location: 1 1 72972-1 1 73425 bp Feature: gene Location: 1173835-1175121 bp Ori: QKT15403.1 Feature: domain Description: COG3464 Location: 1173841-1175095 bp Feature: domain Description: COG3464 Location: 1 1 73841 -1 1 75095 bp Feature: gene Location: 1970409-1970633 bp Feature: gene Location: 1970727-1973444 bp Ori: QKT16220.1 Feature: domain Description: GanB Location: 1971768-1972992 bp Feature: domain Description: GanB Location: 1 971 768-1 972992 bp Feature: gene Location: 1973544-1974926 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1973862-1974480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 973862-1 974480 bp Feature: domain Description: GIIM Note: maturase Location: 1974534-1974762 bp Feature: domain Description: GIIM Note: maturase Location: 1 974534-1 974762 bp Feature: gene Location: 1975839-1976114 bp Feature: gene Location: 1976135-1976767 bp Ori: QKT16091.1 Feature: domain Description: PRK10884 Location: 1976186-1976372 bp Feature: domain Description: PRK1 0884 Location: 1 9761 86-1 976372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), KxYKxGKxW (TIGR03715), COG5263 (Glucan-binding domain (YG repeat) ), Spr (COG0791), COG5617 (Uncharacterized membrane protein ), Cps2a (COG1316), prfC (TIGR00503), RNase_HI_like (cd09279)
RlmL (COG0116), PRK02551 (flavoprotein NrdI; Provisional), COG3464 (Transposase ), GanB (COG3867), PRK10884 (SH3 domain-containing protein; Provisional)