myRT

myRT report for GCA_013348885.1_ASM1334888v1

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Seq: CP054763.1 Klebsiella pneumoniae strain KP20194b2 plasmid pKP20194b2-p1, complete sequence (195077 bp)
Overview 1 RT 1: 177584-182567 bp Neighborhood of RT #1 [177584, 182567] DDE_Tnp_1_5 HHA RVT-GII INT_Cre_C Feature: gene Location: 177584-178552 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177686-178019 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 77686-1 7801 9 bp Feature: gene Location: 178707-178961 bp Ori: QKT34038.1 Feature: domain Description: HHA Location: 178758-178941 bp Feature: domain Description: HHA Location: 1 78758-1 78941 bp Feature: gene Location: 179476-180962 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179881-180007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79881 -1 80007 bp Feature: gene Location: 181048-182184 bp Ori: QKT34039.1 Feature: domain Description: INT_Cre_C Location: 181471-182125 bp Feature: domain Description: INT_Cre_C Location: 1 81 471 -1 821 25 bp Feature: gene Location: 182250-182567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP054762.1 Klebsiella pneumoniae strain KP20194b2 chromosome, complete genome (5449609 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109784-3115595 bp 5 RT 5: 3259772-3265136 bp 6 RT 6: 3332764-3335747 bp 7 RT 7: 3680073-3685627 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109784, 3115651] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259772, 3265189] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332764, 3335747] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3680073, 3685647] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT29878.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 12 17564-12 18335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT29879.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 12 18973-12 19939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT29880.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 1676-12 2 2 366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT29882.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 12 2 3111-12 2 32 94 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT30425.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672 -1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT30426.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 18382 74-183942 9 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT30427.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT30428.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184152 4-1841983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT30429.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 1842 099-1843137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT30446.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT30447.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860720-1861254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186072 0-18612 54 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT30448.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862 766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT30449.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: gene Location: 3109784-3111049 bp Ori: QKT31582.1 Feature: domain Description: umuC Location: 3109787-3111047 bp Feature: domain Description: umuC Location: 3109787-3111047 bp Feature: gene Location: 3111051-3111470 bp Ori: QKT33796.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3111054-3111465 bp Feature: domain Description: PRK102 76 Location: 3111054-3111465 bp Feature: gene Location: 3111550-3113037 bp Ori: QKT31583.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111955-3112645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111955-3112 645 bp Feature: gene Location: 3114432-3114893 bp Feature: domain Description: PinE Location: 3114435-3114885 bp Feature: domain Description: PinE Location: 3114435-3114885 bp Feature: gene Location: 3114947-3115651 bp Ori: QKT31584.1 Feature: domain Description: Rve Location: 3114950-3115595 bp Feature: domain Description: Rve Location: 3114950-3115595 bp Feature: gene Location: 3259772-3261037 bp Ori: QKT31728.1 Feature: domain Description: umuC Location: 3259775-3261035 bp Feature: domain Description: umuC Location: 32 59775-32 61035 bp Feature: gene Location: 3261040-3261459 bp Ori: QKT31729.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3261043-3261454 bp Feature: domain Description: PRK102 76 Location: 32 61043-32 61454 bp Feature: gene Location: 3261538-3263025 bp Ori: QKT31730.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261943-3262633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 61943-32 62 633 bp Feature: gene Location: 3263640-3263882 bp Ori: QKT31731.1 Feature: domain Description: DinI Location: 3263691-3263871 bp Feature: domain Description: DinI Location: 32 63691-32 63871 bp Feature: gene Location: 3264053-3265189 bp Ori: QKT33802.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3264233-3265136 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32 642 33-32 65136 bp Feature: gene Location: 3332764-3333003 bp Feature: gene Location: 3333066-3333299 bp Ori: QKT31799.1 Feature: domain Description: PRK10597 Location: 3333069-3333294 bp Feature: domain Description: PRK10597 Location: 3333069-33332 94 bp Feature: gene Location: 3333378-3334865 bp Ori: QKT31800.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333783-3334473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333783-3334473 bp Feature: gene Location: 3335263-3335505 bp Ori: QKT31801.1 Feature: domain Description: DinI Location: 3335311-3335494 bp Feature: domain Description: DinI Location: 3335311-3335494 bp Feature: gene Location: 3335505-3335747 bp Feature: gene Location: 3680073-3680951 bp Ori: QKT33825.1 Feature: domain Description: Phage_CI_repr Location: 3680100-3680283 bp Feature: domain Description: Phage_CI_repr Location: 3680100-36802 83 bp Feature: domain Description: Phage_CI_repr Location: 3680412-3680604 bp Feature: domain Description: Phage_CI_repr Location: 3680412 -3680604 bp Feature: domain Description: Phage_CI_C Location: 3680631-3680925 bp Feature: domain Description: Phage_CI_C Location: 3680631-368092 5 bp Feature: gene Location: 3680963-3681907 bp Feature: gene Location: 3682006-3683493 bp Ori: QKT32121.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3682411-3683101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3682 411-3683101 bp Feature: gene Location: 3683981-3684961 bp Ori: QKT33826.1 Feature: domain Description: int Location: 3683984-3684911 bp Feature: domain Description: int Location: 3683984-3684911 bp Feature: gene Location: 3685084-3685647 bp Ori: QKT32122.1 Feature: domain Description: YbjK Location: 3685090-3685627 bp Feature: domain Description: YbjK Location: 3685090-368562 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)

Seq: CP054765.1 Klebsiella pneumoniae strain KP20194b2 plasmid pKP20194b2-p3, complete sequence (87095 bp)
Overview 1 RT 1: 11800-17003 bp Neighborhood of RT #1 [11800, 17104] umuC PRK10276 RVT-GII DUF2913 IncFII_repA Feature: gene Location: 11800-12579 bp Ori: QKT34217.1 Feature: domain Description: umuC Location: 11803-12565 bp Feature: domain Description: umuC Location: 11803 -12565 bp Feature: gene Location: 12579-13004 bp Ori: QKT34218.1 Gene: umuD Feature: domain Description: PRK10276 Location: 12630-12990 bp Feature: domain Description: PRK10276 Location: 1263 0-12990 bp Feature: gene Location: 13082-14569 bp Ori: QKT34219.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13487-14177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 487-14177 bp Feature: gene Location: 14984-15598 bp Ori: QKT34220.1 Feature: domain Description: DUF2913 Location: 15014-15500 bp Feature: domain Description: DUF2913 Location: 15014-15500 bp Feature: gene Location: 16505-17104 bp Ori: QKT34291.1 Feature: domain Description: IncFII_repA Location: 16634-17003 bp Feature: domain Description: IncFII_repA Location: 1663 4-17003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140), IncFII_repA (pfam02387)

Seq: CP054766.1 Klebsiella pneumoniae strain KP20194b2 plasmid pKP20194b2-p4, complete sequence (11970 bp)
Overview 1 RT 1: 345-5410 bp Neighborhood of RT #1 [345, 5424] tolA RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 345-716 bp Ori: QKT34299.1 Gene: tolA Feature: domain Description: tolA Location: 453-714 bp Feature: domain Description: tolA Location: 4 53-714 bp Feature: gene Location: 990-1235 bp Feature: gene Location: 1880-3367 bp Ori: QKT34301.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285-2975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285-2975 bp Feature: gene Location: 3472-5157 bp Ori: QKT34302.1 Feature: domain Description: Cloacin Location: 3607-4429 bp Feature: domain Description: Cloacin Location: 3607-4 4 29 bp Feature: domain Description: E2R135 Location: 4438-4843 bp Feature: domain Description: E2R135 Location: 4 4 38-4 84 3 bp Feature: domain Description: Cytotoxic Location: 4897-5146 bp Feature: domain Description: Cytotoxic Location: 4 897-514 6 bp Feature: gene Location: 5167-5424 bp Ori: QKT34303.1 Feature: domain Description: Cloacin_immun Location: 5173-5410 bp Feature: domain Description: Cloacin_immun Location: 5173-54 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tolA (PRK09510), RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)

Seq: CP054764.1 Klebsiella pneumoniae strain KP20194b2 plasmid pKP20194b2-p2, complete sequence (133772 bp)
Overview 1 RT 1: 23672-28569 bp 2 RT 2: 97681-103034 bp Neighborhood of RT #1 [23672, 29306] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [97681, 103171] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QKT34082.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 23675 -23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QKT34084.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25 5 74 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25 625 -25 85 9 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 27945-29306 bp Ori: QKT34086.1 Feature: domain Description: DUF3560 Location: 28212-28569 bp Feature: domain Description: DUF35 60 Location: 28212-285 69 bp Feature: gene Location: 97681-98952 bp Ori: QKT34149.1 Feature: domain Description: umuC Location: 97684-98944 bp Feature: domain Description: umuC Location: 97684-98944 bp Feature: gene Location: 98952-99383 bp Ori: QKT34150.1 Gene: umuD Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: gene Location: 99790-101277 bp Ori: QKT34151.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195 -100885 bp Feature: gene Location: 101526-102497 bp Ori: QKT34152.1 Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 1015 29-102474 bp Feature: gene Location: 102500-103171 bp Ori: QKT34153.1 Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 1025 15 -102722 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)