myRT

myRT report for GCA_013348905.1_ASM1334890v1

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Seq: CP054723.1 Klebsiella pneumoniae strain KP20194f plasmid pKP20194f-p3, complete sequence (87095 bp)
Overview 1 RT 1: 27566-32856 bp Neighborhood of RT #1 [27566, 32870] IncFII_repA DUF2913 RVT-GII PRK10276 umuC Feature: gene Location: 27566-28165 bp Ori: QKT39878.1 Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: gene Location: 29072-29686 bp Ori: QKT39818.1 Feature: domain Description: DUF2913 Location: 29102-29588 bp Feature: domain Description: DUF291 3 Location: 291 02-29588 bp Feature: gene Location: 30101-31588 bp Ori: QKT39819.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31 1 96 bp Feature: gene Location: 31666-32091 bp Ori: QKT39820.1 Gene: umuD Feature: domain Description: PRK10276 Location: 31717-32077 bp Feature: domain Description: PRK1 0276 Location: 31 71 7-32077 bp Feature: gene Location: 32091-32870 bp Ori: QKT39821.1 Feature: domain Description: umuC Location: 32094-32856 bp Feature: domain Description: umuC Location: 32094-32856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IncFII_repA (pfam02387), DUF2913 (pfam11140), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP054721.1 Klebsiella pneumoniae strain KP20194f plasmid pKP20194f-p1, complete sequence (194901 bp)
Overview 1 RT 1: 177536-182520 bp Neighborhood of RT #1 [177536, 182520] DDE_Tnp_1_5 HHA RVT-GII INT_Cre_C Feature: gene Location: 177536-178504 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177638-177971 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177638-177971 bp Feature: gene Location: 178659-178913 bp Ori: QKT39624.1 Feature: domain Description: HHA Location: 178710-178893 bp Feature: domain Description: HHA Location: 178710-178893 bp Feature: gene Location: 179428-180915 bp Ori: QKT39625.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179833-180523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179833-18052 3 bp Feature: gene Location: 181001-182137 bp Ori: QKT39626.1 Feature: domain Description: INT_Cre_C Location: 181424-182078 bp Feature: domain Description: INT_Cre_C Location: 18142 4-182 078 bp Feature: gene Location: 182203-182520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP054724.1 Klebsiella pneumoniae strain KP20194f plasmid pKP20194f-p4, complete sequence (11970 bp)
Overview 1 RT 1: 4539-9604 bp Neighborhood of RT #1 [4539, 9618] tolA RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 4539-4910 bp Ori: QKT39893.1 Gene: tolA Feature: domain Description: tolA Location: 4647-4908 bp Feature: domain Description: tolA Location: 4647-4908 bp Feature: gene Location: 5184-5429 bp Feature: gene Location: 6074-7561 bp Ori: QKT39895.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6479-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6479-7169 bp Feature: gene Location: 7666-9351 bp Ori: QKT39896.1 Feature: domain Description: Cloacin Location: 7801-8623 bp Feature: domain Description: Cloacin Location: 7801-8623 bp Feature: domain Description: E2R135 Location: 8632-9037 bp Feature: domain Description: E2R13 5 Location: 863 2-903 7 bp Feature: domain Description: Cytotoxic Location: 9091-9340 bp Feature: domain Description: Cytotoxic Location: 9091-93 40 bp Feature: gene Location: 9361-9618 bp Ori: QKT39897.1 Feature: domain Description: Cloacin_immun Location: 9367-9604 bp Feature: domain Description: Cloacin_immun Location: 93 67-9604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tolA (PRK09510), RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)

Seq: CP054722.1 Klebsiella pneumoniae strain KP20194f plasmid pKP20194f-p2, complete sequence (133772 bp)
Overview 1 RT 1: 23672-28569 bp 2 RT 2: 97681-103034 bp Neighborhood of RT #1 [23672, 29306] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [97681, 103171] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QKT39669.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QKT39671.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 24 64 4 -24 881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 932-25574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 27945-29306 bp Ori: QKT39673.1 Feature: domain Description: DUF3560 Location: 28212-28569 bp Feature: domain Description: DUF3560 Location: 28212-28569 bp Feature: gene Location: 97681-98952 bp Ori: QKT39735.1 Feature: domain Description: umuC Location: 97684-98944 bp Feature: domain Description: umuC Location: 97684 -9894 4 bp Feature: gene Location: 98952-99383 bp Ori: QKT39736.1 Gene: umuD Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: gene Location: 99790-101277 bp Ori: QKT39737.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: gene Location: 101526-102497 bp Ori: QKT39738.1 Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 101529-1024 74 bp Feature: gene Location: 102500-103171 bp Ori: QKT39739.1 Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054720.1 Klebsiella pneumoniae strain KP20194f chromosome, complete genome (5449011 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109186-3114997 bp 5 RT 5: 3259174-3264538 bp 6 RT 6: 3332166-3335149 bp 7 RT 7: 3679475-3685029 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109186, 3115053] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259174, 3264591] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332166, 3335149] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3679475, 3685049] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT35468.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 12175 64-1218335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT35469.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT35470.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT35472.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT36013.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT36014.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT36015.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184035 7-1841047 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT36016.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 18415 24-1841983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT36017.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT36034.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 185 9010-185 945 1 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT36035.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-186125 1 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT36036.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 186175 8-1862766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT36037.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4917 Location: 1865 45 6-1866380 bp Feature: gene Location: 3109186-3110451 bp Ori: QKT37171.1 Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: gene Location: 3110453-3110872 bp Ori: QKT39383.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3110456-3110867 bp Feature: domain Description: PRK10276 Location: 311045 6-3110867 bp Feature: gene Location: 3110952-3112439 bp Ori: QKT37172.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311135 7-3112047 bp Feature: gene Location: 3113834-3114295 bp Feature: domain Description: PinE Location: 3113837-3114287 bp Feature: domain Description: PinE Location: 3113837-3114287 bp Feature: gene Location: 3114349-3115053 bp Ori: QKT37173.1 Feature: domain Description: Rve Location: 3114352-3114997 bp Feature: domain Description: Rve Location: 311435 2-3114997 bp Feature: gene Location: 3259174-3260439 bp Ori: QKT37317.1 Feature: domain Description: umuC Location: 3259177-3260437 bp Feature: domain Description: umuC Location: 325 9177-3260437 bp Feature: gene Location: 3260442-3260861 bp Ori: QKT37318.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3260445-3260856 bp Feature: domain Description: PRK10276 Location: 3260445 -326085 6 bp Feature: gene Location: 3260940-3262427 bp Ori: QKT37319.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261345-3262035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261345 -3262035 bp Feature: gene Location: 3263042-3263284 bp Ori: QKT37320.1 Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: gene Location: 3263455-3264591 bp Ori: QKT39389.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635-3264538 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635 -32645 38 bp Feature: gene Location: 3332166-3332405 bp Feature: gene Location: 3332468-3332701 bp Ori: QKT37388.1 Feature: domain Description: PRK10597 Location: 3332471-3332696 bp Feature: domain Description: PRK105 97 Location: 3332471-3332696 bp Feature: gene Location: 3332780-3334267 bp Ori: QKT37389.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185 -3333875 bp Feature: gene Location: 3334665-3334907 bp Ori: QKT37390.1 Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: gene Location: 3334907-3335149 bp Feature: gene Location: 3679475-3680353 bp Ori: QKT39411.1 Feature: domain Description: Phage_CI_repr Location: 3679502-3679685 bp Feature: domain Description: Phage_CI_repr Location: 36795 02-3679685 bp Feature: domain Description: Phage_CI_repr Location: 3679814-3680006 bp Feature: domain Description: Phage_CI_repr Location: 3679814-3680006 bp Feature: domain Description: Phage_CI_C Location: 3680033-3680327 bp Feature: domain Description: Phage_CI_C Location: 3680033-3680327 bp Feature: gene Location: 3680365-3681309 bp Feature: gene Location: 3681408-3682895 bp Ori: QKT37711.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681813-3682503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681813-36825 03 bp Feature: gene Location: 3683383-3684363 bp Ori: QKT39412.1 Feature: domain Description: int Location: 3683386-3684313 bp Feature: domain Description: int Location: 3683386-3684313 bp Feature: gene Location: 3684486-3685049 bp Ori: QKT37712.1 Feature: domain Description: YbjK Location: 3684492-3685029 bp Feature: domain Description: YbjK Location: 3684492-3685 029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)