myRT

myRT report for GCA_013348925.1_ASM1334892v1

Download annotations/find similar RTs

Seq: CP054760.1 Klebsiella pneumoniae strain KP20194c plasmid pKP20194c-p4, complete sequence (11970 bp)
Overview 1 RT 1: 3695-8772 bp Neighborhood of RT #1 [3695, 8774] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII tolA Feature: gene Location: 3695-3952 bp Ori: QKT45465.1 Feature: domain Description: Cloacin_immun Location: 3701-3938 bp Feature: domain Description: Cloacin_immun Location: 3701 -3938 bp Feature: gene Location: 3962-5647 bp Ori: QKT45466.1 Feature: domain Description: Cloacin Location: 4097-4919 bp Feature: domain Description: Cloacin Location: 4097-491 9 bp Feature: domain Description: E2R135 Location: 4928-5333 bp Feature: domain Description: E2R1 35 Location: 4928-5333 bp Feature: domain Description: Cytotoxic Location: 5387-5636 bp Feature: domain Description: Cytotoxic Location: 5387-5636 bp Feature: gene Location: 5752-7239 bp Ori: QKT45467.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6157-6847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 57-6847 bp Feature: gene Location: 7884-8129 bp Feature: gene Location: 8403-8774 bp Ori: QKT45469.1 Gene: tolA Feature: domain Description: tolA Location: 8511-8772 bp Feature: domain Description: tolA Location: 851 1 -8772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII, tolA (PRK09510)

Seq: CP054758.1 Klebsiella pneumoniae strain KP20194c plasmid pKP20194c-p2, complete sequence (123177 bp)
Overview 1 RT 1: 13077-17974 bp 2 RT 2: 87086-92439 bp Neighborhood of RT #1 [13077, 18711] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [87086, 92576] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 13077-13499 bp Ori: QKT45247.1 Feature: domain Description: DUF1380 Location: 13080-13374 bp Feature: domain Description: DUF1380 Location: 13080-13374 bp Feature: gene Location: 13496-13687 bp Feature: gene Location: 14001-15668 bp Ori: QKT45249.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14049-14286 bp Feature: domain Description: RVT_N Location: 14049-142 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14337-14979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14337-14979 bp Feature: domain Description: GIIM Note: maturase Location: 15030-15264 bp Feature: domain Description: GIIM Note: maturase Location: 15030-152 64 bp Feature: domain Description: HNHc Note: nucleases Location: 15474-15633 bp Feature: domain Description: HNHc Note: nucleases Location: 15474-15633 bp Feature: gene Location: 17068-17298 bp Feature: gene Location: 17350-18711 bp Ori: QKT45251.1 Feature: domain Description: DUF3560 Location: 17617-17974 bp Feature: domain Description: DUF3560 Location: 17617-17974 bp Feature: gene Location: 87086-88357 bp Ori: QKT45312.1 Feature: domain Description: umuC Location: 87089-88349 bp Feature: domain Description: umuC Location: 87089-88349 bp Feature: gene Location: 88357-88788 bp Ori: QKT45313.1 Gene: umuD Feature: domain Description: PRK10276 Location: 88408-88771 bp Feature: domain Description: PRK102 76 Location: 88408-88771 bp Feature: gene Location: 89195-90682 bp Ori: QKT45314.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89600-90290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89600-902 90 bp Feature: gene Location: 90931-91902 bp Ori: QKT45315.1 Feature: domain Description: StbA Location: 90934-91879 bp Feature: domain Description: StbA Location: 90934-91879 bp Feature: gene Location: 91905-92576 bp Ori: QKT45316.1 Feature: domain Description: Plasmid_stab_B Location: 91920-92127 bp Feature: domain Description: Plasmid_stab_B Location: 9192 0-92 12 7 bp Feature: domain Description: Plasmid_stab_B Location: 92232-92439 bp Feature: domain Description: Plasmid_stab_B Location: 92 2 32 -92 439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054759.1 Klebsiella pneumoniae strain KP20194c plasmid pKP20194c-p3, complete sequence (87095 bp)
Overview 1 RT 1: 27566-32856 bp Neighborhood of RT #1 [27566, 32870] IncFII_repA DUF2913 RVT-GII PRK10276 umuC Feature: gene Location: 27566-28165 bp Ori: QKT45455.1 Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: gene Location: 29072-29686 bp Ori: QKT45395.1 Feature: domain Description: DUF2913 Location: 29102-29588 bp Feature: domain Description: DUF2913 Location: 29102-29588 bp Feature: gene Location: 30101-31588 bp Ori: QKT45396.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0506-3 1196 bp Feature: gene Location: 31666-32091 bp Ori: QKT45397.1 Gene: umuD Feature: domain Description: PRK10276 Location: 31717-32077 bp Feature: domain Description: PRK10276 Location: 3 1717-3 2077 bp Feature: gene Location: 32091-32870 bp Ori: QKT45398.1 Feature: domain Description: umuC Location: 32094-32856 bp Feature: domain Description: umuC Location: 3 2094-3 2856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IncFII_repA (pfam02387), DUF2913 (pfam11140), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP054756.1 Klebsiella pneumoniae strain KP20194c chromosome, complete genome (5449012 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109187-3114998 bp 5 RT 5: 3259175-3264539 bp 6 RT 6: 3332167-3335150 bp 7 RT 7: 3679476-3685030 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109187, 3115054] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259175, 3264592] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332167, 3335150] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3679476, 3685050] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT41053.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 1217564 -1218335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT41054.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT41055.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT41057.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT41598.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT41599.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 1838274 -18394 29 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT41600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 0357-184 104 7 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT41601.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184 1524 -184 1983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT41602.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 184 2099-184 3137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT41619.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-18594 51 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT41620.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT41621.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT41622.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4 917 Location: 18654 56-1866380 bp Feature: gene Location: 3109187-3110452 bp Ori: QKT42758.1 Feature: domain Description: umuC Location: 3109190-3110450 bp Feature: domain Description: umuC Location: 3109190-31104 50 bp Feature: gene Location: 3110454-3110873 bp Ori: QKT44968.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3110457-3110868 bp Feature: domain Description: PRK10276 Location: 31104 57-3110868 bp Feature: gene Location: 3110953-3112440 bp Ori: QKT42759.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111358-3112048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111358-311204 8 bp Feature: gene Location: 3113835-3114296 bp Feature: domain Description: PinE Location: 3113838-3114288 bp Feature: domain Description: PinE Location: 3113838-3114 288 bp Feature: gene Location: 3114350-3115054 bp Ori: QKT42760.1 Feature: domain Description: Rve Location: 3114353-3114998 bp Feature: domain Description: Rve Location: 3114 353-3114 998 bp Feature: gene Location: 3259175-3260440 bp Ori: QKT42904.1 Feature: domain Description: umuC Location: 3259178-3260438 bp Feature: domain Description: umuC Location: 3259178-32604 38 bp Feature: gene Location: 3260443-3260862 bp Ori: QKT42905.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3260446-3260857 bp Feature: domain Description: PRK10276 Location: 32604 4 6-3260857 bp Feature: gene Location: 3260941-3262428 bp Ori: QKT42906.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261346-3262036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326134 6-3262036 bp Feature: gene Location: 3263043-3263285 bp Ori: QKT42907.1 Feature: domain Description: DinI Location: 3263094-3263274 bp Feature: domain Description: DinI Location: 3263094 -3263274 bp Feature: gene Location: 3263456-3264592 bp Ori: QKT44974.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263636-3264539 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263636-3264 539 bp Feature: gene Location: 3332167-3332406 bp Feature: gene Location: 3332469-3332702 bp Ori: QKT42975.1 Feature: domain Description: PRK10597 Location: 3332472-3332697 bp Feature: domain Description: PRK10597 Location: 33324 72-3332697 bp Feature: gene Location: 3332781-3334268 bp Ori: QKT42976.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333186-3333876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333186-3333876 bp Feature: gene Location: 3334666-3334908 bp Ori: QKT42977.1 Feature: domain Description: DinI Location: 3334714-3334897 bp Feature: domain Description: DinI Location: 3334 714 -3334 897 bp Feature: gene Location: 3334908-3335150 bp Feature: gene Location: 3679476-3680354 bp Ori: QKT44997.1 Feature: domain Description: Phage_CI_repr Location: 3679503-3679686 bp Feature: domain Description: Phage_CI_repr Location: 3679503-3679686 bp Feature: domain Description: Phage_CI_repr Location: 3679815-3680007 bp Feature: domain Description: Phage_CI_repr Location: 3679815-3680007 bp Feature: domain Description: Phage_CI_C Location: 3680034-3680328 bp Feature: domain Description: Phage_CI_C Location: 3680034 -3680328 bp Feature: gene Location: 3680366-3681310 bp Feature: gene Location: 3681409-3682896 bp Ori: QKT43297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681814-3682504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681814 -3682504 bp Feature: gene Location: 3683384-3684364 bp Ori: QKT44998.1 Feature: domain Description: int Location: 3683387-3684314 bp Feature: domain Description: int Location: 3683387-3684 314 bp Feature: gene Location: 3684487-3685050 bp Ori: QKT43298.1 Feature: domain Description: YbjK Location: 3684493-3685030 bp Feature: domain Description: YbjK Location: 3684 4 93-3685030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)