myRT

myRT report for GCA_013348945.1_ASM1334894v1

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Seq: CP054734.1 Klebsiella pneumoniae strain KP20194d plasmid pKP20194d-p2, complete sequence (123177 bp)
Overview 1 RT 1: 13077-17974 bp 2 RT 2: 87086-92439 bp Neighborhood of RT #1 [13077, 18711] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [87086, 92576] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 13077-13499 bp Ori: QKT50824.1 Feature: domain Description: DUF1380 Location: 13080-13374 bp Feature: domain Description: DUF1 380 Location: 1 3080-1 3374 bp Feature: gene Location: 13496-13687 bp Feature: gene Location: 14001-15668 bp Ori: QKT50826.1 Gene: ltrA Feature: domain Description: RVT_N Location: 14049-14286 bp Feature: domain Description: RVT_N Location: 1 4049-1 4286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14337-14979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4337-1 4979 bp Feature: domain Description: GIIM Note: maturase Location: 15030-15264 bp Feature: domain Description: GIIM Note: maturase Location: 1 5030-1 5264 bp Feature: domain Description: HNHc Note: nucleases Location: 15474-15633 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5474-1 5633 bp Feature: gene Location: 17068-17298 bp Feature: gene Location: 17350-18711 bp Ori: QKT50828.1 Feature: domain Description: DUF3560 Location: 17617-17974 bp Feature: domain Description: DUF3560 Location: 1 761 7-1 7974 bp Feature: gene Location: 87086-88357 bp Ori: QKT50890.1 Feature: domain Description: umuC Location: 87089-88349 bp Feature: domain Description: umuC Location: 87089-88349 bp Feature: gene Location: 88357-88788 bp Ori: QKT50891.1 Gene: umuD Feature: domain Description: PRK10276 Location: 88408-88771 bp Feature: domain Description: PRK1 0276 Location: 88408-88771 bp Feature: gene Location: 89195-90682 bp Ori: QKT50892.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89600-90290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89600-90290 bp Feature: gene Location: 90931-91902 bp Ori: QKT50893.1 Feature: domain Description: StbA Location: 90934-91879 bp Feature: domain Description: StbA Location: 90934-91 879 bp Feature: gene Location: 91905-92576 bp Ori: QKT50894.1 Feature: domain Description: Plasmid_stab_B Location: 91920-92127 bp Feature: domain Description: Plasmid_stab_B Location: 91 920-921 27 bp Feature: domain Description: Plasmid_stab_B Location: 92232-92439 bp Feature: domain Description: Plasmid_stab_B Location: 92232-92439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054732.1 Klebsiella pneumoniae strain KP20194d chromosome, complete genome (5448829 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109186-3114997 bp 5 RT 5: 3259174-3264538 bp 6 RT 6: 3332166-3335149 bp 7 RT 7: 3679293-3684847 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109186, 3115053] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259174, 3264591] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332166, 3335149] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3679293, 3684867] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT46632.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 12 17564-12 18335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT46633.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 12 18973-12 19939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT46634.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 1676-12 2 2 366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT46636.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 12 2 3111-12 2 32 94 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT47176.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672 -1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT47177.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 18382 74-183942 9 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT47178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT47179.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184152 4-1841983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT47180.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 1842 099-1843137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT47197.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT47198.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860720-1861254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186072 0-18612 54 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT47199.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862 766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT47200.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: gene Location: 3109186-3110451 bp Ori: QKT48332.1 Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: gene Location: 3110453-3110872 bp Ori: QKT50550.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3110456-3110867 bp Feature: domain Description: PRK102 76 Location: 3110456-3110867 bp Feature: gene Location: 3110952-3112439 bp Ori: QKT48333.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112 047 bp Feature: gene Location: 3113834-3114295 bp Feature: domain Description: PinE Location: 3113837-3114287 bp Feature: domain Description: PinE Location: 3113837-31142 87 bp Feature: gene Location: 3114349-3115053 bp Ori: QKT48334.1 Feature: domain Description: Rve Location: 3114352-3114997 bp Feature: domain Description: Rve Location: 3114352 -3114997 bp Feature: gene Location: 3259174-3260439 bp Ori: QKT48478.1 Feature: domain Description: umuC Location: 3259177-3260437 bp Feature: domain Description: umuC Location: 32 59177-32 60437 bp Feature: gene Location: 3260442-3260861 bp Ori: QKT48479.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3260445-3260856 bp Feature: domain Description: PRK102 76 Location: 32 60445-32 60856 bp Feature: gene Location: 3260940-3262427 bp Ori: QKT48480.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261345-3262035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 61345-32 62 035 bp Feature: gene Location: 3263042-3263284 bp Ori: QKT48481.1 Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: domain Description: DinI Location: 32 63093-32 632 73 bp Feature: gene Location: 3263455-3264591 bp Ori: QKT50556.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635-3264538 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32 63635-32 64538 bp Feature: gene Location: 3332166-3332405 bp Feature: gene Location: 3332468-3332701 bp Ori: QKT48549.1 Feature: domain Description: PRK10597 Location: 3332471-3332696 bp Feature: domain Description: PRK10597 Location: 3332 471-3332 696 bp Feature: gene Location: 3332780-3334267 bp Ori: QKT48550.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: gene Location: 3334665-3334907 bp Ori: QKT48551.1 Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: gene Location: 3334907-3335149 bp Feature: gene Location: 3679293-3680171 bp Ori: QKT50577.1 Feature: domain Description: Phage_CI_repr Location: 3679320-3679503 bp Feature: domain Description: Phage_CI_repr Location: 367932 0-3679503 bp Feature: domain Description: Phage_CI_repr Location: 3679632-3679824 bp Feature: domain Description: Phage_CI_repr Location: 3679632 -367982 4 bp Feature: domain Description: Phage_CI_C Location: 3679851-3680145 bp Feature: domain Description: Phage_CI_C Location: 3679851-3680145 bp Feature: gene Location: 3680183-3681127 bp Feature: gene Location: 3681226-3682713 bp Ori: QKT48873.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682 32 1 bp Feature: gene Location: 3683201-3684181 bp Ori: QKT50578.1 Feature: domain Description: int Location: 3683204-3684131 bp Feature: domain Description: int Location: 36832 04-3684131 bp Feature: gene Location: 3684304-3684867 bp Ori: QKT48874.1 Feature: domain Description: YbjK Location: 3684310-3684847 bp Feature: domain Description: YbjK Location: 3684310-3684847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)

Seq: CP054735.1 Klebsiella pneumoniae strain KP20194d plasmid pKP20194d-p3, complete sequence (87095 bp)
Overview 1 RT 1: 52255-57458 bp Neighborhood of RT #1 [52255, 57559] umuC PRK10276 RVT-GII DUF2913 IncFII_repA Feature: gene Location: 52255-53034 bp Ori: QKT51002.1 Feature: domain Description: umuC Location: 52258-53020 bp Feature: domain Description: umuC Location: 52258-53 020 bp Feature: gene Location: 53034-53459 bp Ori: QKT51003.1 Gene: umuD Feature: domain Description: PRK10276 Location: 53085-53445 bp Feature: domain Description: PRK10276 Location: 53 085-53 445 bp Feature: gene Location: 53537-55024 bp Ori: QKT51004.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53942-54632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 942-5463 2 bp Feature: gene Location: 55439-56053 bp Ori: QKT51005.1 Feature: domain Description: DUF2913 Location: 55469-55955 bp Feature: domain Description: DUF2913 Location: 55469-55955 bp Feature: gene Location: 56960-57559 bp Ori: QKT51038.1 Feature: domain Description: IncFII_repA Location: 57089-57458 bp Feature: domain Description: IncFII_repA Location: 57089-57458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140), IncFII_repA (pfam02387)

Seq: CP054736.1 Klebsiella pneumoniae strain KP20194d plasmid pKP20194d-p4, complete sequence (11970 bp)
Overview 1 RT 1: 4539-9604 bp Neighborhood of RT #1 [4539, 9618] tolA RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 4539-4910 bp Ori: QKT51047.1 Gene: tolA Feature: domain Description: tolA Location: 4647-4908 bp Feature: domain Description: tolA Location: 4 64 7-4 908 bp Feature: gene Location: 5184-5429 bp Feature: gene Location: 6074-7561 bp Ori: QKT51049.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6479-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 79-7169 bp Feature: gene Location: 7666-9351 bp Ori: QKT51050.1 Feature: domain Description: Cloacin Location: 7801-8623 bp Feature: domain Description: Cloacin Location: 7801-8623 bp Feature: domain Description: E2R135 Location: 8632-9037 bp Feature: domain Description: E2R135 Location: 8632-9037 bp Feature: domain Description: Cytotoxic Location: 9091-9340 bp Feature: domain Description: Cytotoxic Location: 9091-934 0 bp Feature: gene Location: 9361-9618 bp Ori: QKT51051.1 Feature: domain Description: Cloacin_immun Location: 9367-9604 bp Feature: domain Description: Cloacin_immun Location: 9367-9604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tolA (PRK09510), RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)