myRT

myRT report for GCA_013349005.1_ASM1334900v1

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Seq: CP054746.1 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p2, complete sequence (133772 bp)
Overview 1 RT 1: 23672-28569 bp 2 RT 2: 97681-103034 bp Neighborhood of RT #1 [23672, 29306] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [97681, 103171] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QKT67580.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1 380 Location: 23675-23969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QKT67582.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 27945-29306 bp Ori: QKT67584.1 Feature: domain Description: DUF3560 Location: 28212-28569 bp Feature: domain Description: DUF3560 Location: 2821 2-28569 bp Feature: gene Location: 97681-98952 bp Ori: QKT67645.1 Feature: domain Description: umuC Location: 97684-98944 bp Feature: domain Description: umuC Location: 97684-98944 bp Feature: gene Location: 98952-99383 bp Ori: QKT67646.1 Gene: umuD Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK1 0276 Location: 99003-99366 bp Feature: gene Location: 99790-101277 bp Ori: QKT67647.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 95-1 00885 bp Feature: gene Location: 101526-102497 bp Ori: QKT67648.1 Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 1 01 529-1 02474 bp Feature: gene Location: 102500-103171 bp Ori: QKT67649.1 Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 1 0251 5-1 02722 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 1 02827-1 03034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054744.1 Klebsiella pneumoniae strain KP20194c4 chromosome, complete genome (5450029 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109186-3114997 bp 5 RT 5: 3259174-3264538 bp 6 RT 6: 3332166-3335149 bp 7 RT 7: 3679293-3684847 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109186, 3115053] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259174, 3264591] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332166, 3335149] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3679293, 3684867] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT63379.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 12 17564-12 18335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT63380.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 12 18973-12 19939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT63381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 1676-12 2 2 366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT63383.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 12 2 3111-12 2 32 94 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT63923.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672 -1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT63924.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 18382 74-183942 9 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT63925.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT63926.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184152 4-1841983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT63927.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 1842 099-1843137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT63944.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT63945.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860720-1861254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 186072 0-18612 54 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT63946.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862 766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT63947.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: gene Location: 3109186-3110451 bp Ori: QKT65081.1 Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: gene Location: 3110453-3110872 bp Ori: QKT67295.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3110456-3110867 bp Feature: domain Description: PRK102 76 Location: 3110456-3110867 bp Feature: gene Location: 3110952-3112439 bp Ori: QKT65082.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112 047 bp Feature: gene Location: 3113834-3114295 bp Feature: domain Description: PinE Location: 3113837-3114287 bp Feature: domain Description: PinE Location: 3113837-31142 87 bp Feature: gene Location: 3114349-3115053 bp Ori: QKT65083.1 Feature: domain Description: Rve Location: 3114352-3114997 bp Feature: domain Description: Rve Location: 3114352 -3114997 bp Feature: gene Location: 3259174-3260439 bp Ori: QKT65227.1 Feature: domain Description: umuC Location: 3259177-3260437 bp Feature: domain Description: umuC Location: 32 59177-32 60437 bp Feature: gene Location: 3260442-3260861 bp Ori: QKT65228.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3260445-3260856 bp Feature: domain Description: PRK102 76 Location: 32 60445-32 60856 bp Feature: gene Location: 3260940-3262427 bp Ori: QKT65229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261345-3262035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 61345-32 62 035 bp Feature: gene Location: 3263042-3263284 bp Ori: QKT65230.1 Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: domain Description: DinI Location: 32 63093-32 632 73 bp Feature: gene Location: 3263455-3264591 bp Ori: QKT67301.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635-3264538 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32 63635-32 64538 bp Feature: gene Location: 3332166-3332405 bp Feature: gene Location: 3332468-3332701 bp Ori: QKT65298.1 Feature: domain Description: PRK10597 Location: 3332471-3332696 bp Feature: domain Description: PRK10597 Location: 3332 471-3332 696 bp Feature: gene Location: 3332780-3334267 bp Ori: QKT65299.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: gene Location: 3334665-3334907 bp Ori: QKT65300.1 Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: gene Location: 3334907-3335149 bp Feature: gene Location: 3679293-3680171 bp Ori: QKT67324.1 Feature: domain Description: Phage_CI_repr Location: 3679320-3679503 bp Feature: domain Description: Phage_CI_repr Location: 367932 0-3679503 bp Feature: domain Description: Phage_CI_repr Location: 3679632-3679824 bp Feature: domain Description: Phage_CI_repr Location: 3679632 -367982 4 bp Feature: domain Description: Phage_CI_C Location: 3679851-3680145 bp Feature: domain Description: Phage_CI_C Location: 3679851-3680145 bp Feature: gene Location: 3680183-3681127 bp Feature: gene Location: 3681226-3682713 bp Ori: QKT65620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682 32 1 bp Feature: gene Location: 3683201-3684181 bp Ori: QKT67325.1 Feature: domain Description: int Location: 3683204-3684131 bp Feature: domain Description: int Location: 36832 04-3684131 bp Feature: gene Location: 3684304-3684867 bp Ori: QKT65621.1 Feature: domain Description: YbjK Location: 3684310-3684847 bp Feature: domain Description: YbjK Location: 3684310-3684847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)

Seq: CP054748.1 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p4, complete sequence (11971 bp)
Overview 1 RT 1: 5991-11056 bp Neighborhood of RT #1 [5991, 11070] tolA RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 5991-6362 bp Ori: QKT67804.1 Gene: tolA Feature: domain Description: tolA Location: 6099-6360 bp Feature: domain Description: tolA Location: 6099-63 60 bp Feature: gene Location: 6636-6881 bp Feature: gene Location: 7526-9013 bp Ori: QKT67806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7931-8621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 793 1-8621 bp Feature: gene Location: 9118-10803 bp Ori: QKT67807.1 Feature: domain Description: Cloacin Location: 9253-10075 bp Feature: domain Description: Cloacin Location: 9253 -10075 bp Feature: domain Description: E2R135 Location: 10084-10489 bp Feature: domain Description: E2R13 5 Location: 10084-10489 bp Feature: domain Description: Cytotoxic Location: 10543-10792 bp Feature: domain Description: Cytotoxic Location: 10543 -10792 bp Feature: gene Location: 10813-11070 bp Ori: QKT67808.1 Feature: domain Description: Cloacin_immun Location: 10819-11056 bp Feature: domain Description: Cloacin_immun Location: 10819-11056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tolA (PRK09510), RVT-GII, Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)

Seq: CP054747.1 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p3, complete sequence (87095 bp)
Overview 1 RT 1: 38131-43421 bp Neighborhood of RT #1 [38131, 43435] IncFII_repA DUF2913 RVT-GII PRK10276 umuC Feature: gene Location: 38131-38730 bp Ori: QKT67789.1 Feature: domain Description: IncFII_repA Location: 38260-38629 bp Feature: domain Description: IncFII_repA Location: 38260-38629 bp Feature: gene Location: 39637-40251 bp Ori: QKT67742.1 Feature: domain Description: DUF2913 Location: 39667-40153 bp Feature: domain Description: DUF2913 Location: 39667-4 0153 bp Feature: gene Location: 40666-42153 bp Ori: QKT67743.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41071-41761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1071-4 1761 bp Feature: gene Location: 42231-42656 bp Ori: QKT67744.1 Gene: umuD Feature: domain Description: PRK10276 Location: 42282-42642 bp Feature: domain Description: PRK10276 Location: 4 2282-4 264 2 bp Feature: gene Location: 42656-43435 bp Ori: QKT67745.1 Feature: domain Description: umuC Location: 42659-43421 bp Feature: domain Description: umuC Location: 4 2659-4 34 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IncFII_repA (pfam02387), DUF2913 (pfam11140), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)