myRT

myRT report for GCA_013349065.1_ASM1334906v1

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Seq: CP054777.1 Klebsiella pneumoniae strain KP20194a2 plasmid pKP20194a2-p3, complete sequence (87095 bp)
Overview 1 RT 1: 52255-57458 bp Neighborhood of RT #1 [52255, 57559] umuC PRK10276 RVT-GII DUF2913 IncFII_repA Feature: gene Location: 52255-53034 bp Ori: QKT84519.1 Feature: domain Description: umuC Location: 52258-53020 bp Feature: domain Description: umuC Location: 52258-53020 bp Feature: gene Location: 53034-53459 bp Ori: QKT84520.1 Gene: umuD Feature: domain Description: PRK10276 Location: 53085-53445 bp Feature: domain Description: PRK1 0276 Location: 53085-53445 bp Feature: gene Location: 53537-55024 bp Ori: QKT84521.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53942-54632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53942-54632 bp Feature: gene Location: 55439-56053 bp Ori: QKT84522.1 Feature: domain Description: DUF2913 Location: 55469-55955 bp Feature: domain Description: DUF291 3 Location: 55469-55955 bp Feature: gene Location: 56960-57559 bp Ori: QKT84555.1 Feature: domain Description: IncFII_repA Location: 57089-57458 bp Feature: domain Description: IncFII_repA Location: 57089-57458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140), IncFII_repA (pfam02387)

Seq: CP054776.1 Klebsiella pneumoniae strain KP20194a2 plasmid pKP20194a2-p2, complete sequence (133772 bp)
Overview 1 RT 1: 23672-28569 bp 2 RT 2: 97681-103034 bp Neighborhood of RT #1 [23672, 29306] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [97681, 103171] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23672-24094 bp Ori: QKT84340.1 Feature: domain Description: DUF1380 Location: 23675-23969 bp Feature: domain Description: DUF1380 Location: 2 3675-2 3969 bp Feature: gene Location: 24091-24282 bp Feature: gene Location: 24596-26263 bp Ori: QKT84342.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24644-24881 bp Feature: domain Description: RVT_N Location: 2 4644-2 4881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24932-25574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4932 -2 5574 bp Feature: domain Description: GIIM Note: maturase Location: 25625-25859 bp Feature: domain Description: GIIM Note: maturase Location: 2 562 5-2 5859 bp Feature: domain Description: HNHc Note: nucleases Location: 26069-26228 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6069-2 62 2 8 bp Feature: gene Location: 27663-27893 bp Feature: gene Location: 27945-29306 bp Ori: QKT84344.1 Feature: domain Description: DUF3560 Location: 28212-28569 bp Feature: domain Description: DUF3560 Location: 2 82 12 -2 8569 bp Feature: gene Location: 97681-98952 bp Ori: QKT84405.1 Feature: domain Description: umuC Location: 97684-98944 bp Feature: domain Description: umuC Location: 97684-98944 bp Feature: gene Location: 98952-99383 bp Ori: QKT84406.1 Gene: umuD Feature: domain Description: PRK10276 Location: 99003-99366 bp Feature: domain Description: PRK102 76 Location: 99003-99366 bp Feature: gene Location: 99790-101277 bp Ori: QKT84407.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100195-100885 bp Feature: gene Location: 101526-102497 bp Ori: QKT84408.1 Feature: domain Description: StbA Location: 101529-102474 bp Feature: domain Description: StbA Location: 10152 9-102 474 bp Feature: gene Location: 102500-103171 bp Ori: QKT84409.1 Feature: domain Description: Plasmid_stab_B Location: 102515-102722 bp Feature: domain Description: Plasmid_stab_B Location: 102 515-102 72 2 bp Feature: domain Description: Plasmid_stab_B Location: 102827-103034 bp Feature: domain Description: Plasmid_stab_B Location: 102 82 7-103034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054775.1 Klebsiella pneumoniae strain KP20194a2 plasmid pKP20194a2-p1, complete sequence (195030 bp)
Overview 1 RT 1: 177537-182520 bp Neighborhood of RT #1 [177537, 182520] DDE_Tnp_1_5 HHA RVT-GII INT_Cre_C Feature: gene Location: 177537-178505 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177639-177972 bp Feature: domain Description: DDE_Tnp_1_5 Location: 17763 9-177972 bp Feature: gene Location: 178660-178914 bp Ori: QKT84296.1 Feature: domain Description: HHA Location: 178711-178894 bp Feature: domain Description: HHA Location: 178711-178894 bp Feature: gene Location: 179429-180915 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179834-180446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17983 4-180446 bp Feature: gene Location: 181001-182137 bp Ori: QKT84297.1 Feature: domain Description: INT_Cre_C Location: 181424-182078 bp Feature: domain Description: INT_Cre_C Location: 181424-182078 bp Feature: gene Location: 182203-182520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP054774.1 Klebsiella pneumoniae strain KP20194a2 chromosome, complete genome (5447900 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3107989-3113800 bp 5 RT 5: 3257977-3263341 bp 6 RT 6: 3330969-3333952 bp 7 RT 7: 3678364-3683918 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3107989, 3113856] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3257977, 3263394] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3330969, 3333952] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3678364, 3683938] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT80141.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 1217564 -1218335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT80142.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT80143.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT80145.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT80686.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT80687.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 1838274 -18394 29 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT80688.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 0357-184 104 7 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT80689.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184 1524 -184 1983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT80690.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 184 2099-184 3137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT80707.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-18594 51 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT80708.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT80709.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT80710.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4 917 Location: 18654 56-1866380 bp Feature: gene Location: 3107989-3109254 bp Ori: QKT81843.1 Feature: domain Description: umuC Location: 3107992-3109252 bp Feature: domain Description: umuC Location: 3107992-3109252 bp Feature: gene Location: 3109256-3109675 bp Ori: QKT84056.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3109259-3109670 bp Feature: domain Description: PRK10276 Location: 3109259-3109670 bp Feature: gene Location: 3109755-3111242 bp Ori: QKT81844.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3110160-3110850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3110160-3110850 bp Feature: gene Location: 3112637-3113098 bp Feature: domain Description: PinE Location: 3112640-3113090 bp Feature: domain Description: PinE Location: 311264 0-3113090 bp Feature: gene Location: 3113152-3113856 bp Ori: QKT81845.1 Feature: domain Description: Rve Location: 3113155-3113800 bp Feature: domain Description: Rve Location: 3113155-3113800 bp Feature: gene Location: 3257977-3259242 bp Ori: QKT81989.1 Feature: domain Description: umuC Location: 3257980-3259240 bp Feature: domain Description: umuC Location: 3257980-325924 0 bp Feature: gene Location: 3259245-3259664 bp Ori: QKT81990.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3259248-3259659 bp Feature: domain Description: PRK10276 Location: 325924 8-3259659 bp Feature: gene Location: 3259743-3261230 bp Ori: QKT81991.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3260148-3260838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326014 8-3260838 bp Feature: gene Location: 3261845-3262087 bp Ori: QKT81992.1 Feature: domain Description: DinI Location: 3261896-3262076 bp Feature: domain Description: DinI Location: 3261896-3262076 bp Feature: gene Location: 3262258-3263394 bp Ori: QKT84062.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3262438-3263341 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 32624 38-326334 1 bp Feature: gene Location: 3330969-3331208 bp Feature: gene Location: 3331271-3331504 bp Ori: QKT82060.1 Feature: domain Description: PRK10597 Location: 3331274-3331499 bp Feature: domain Description: PRK10597 Location: 3331274 -33314 99 bp Feature: gene Location: 3331583-3333070 bp Ori: QKT82061.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331988-3332678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331988-3332678 bp Feature: gene Location: 3333468-3333710 bp Ori: QKT82062.1 Feature: domain Description: DinI Location: 3333516-3333699 bp Feature: domain Description: DinI Location: 3333516-3333699 bp Feature: gene Location: 3333710-3333952 bp Feature: gene Location: 3678364-3679242 bp Ori: QKT84084.1 Feature: domain Description: Phage_CI_repr Location: 3678391-3678574 bp Feature: domain Description: Phage_CI_repr Location: 3678391-3678574 bp Feature: domain Description: Phage_CI_repr Location: 3678703-3678895 bp Feature: domain Description: Phage_CI_repr Location: 3678703-3678895 bp Feature: domain Description: Phage_CI_C Location: 3678922-3679216 bp Feature: domain Description: Phage_CI_C Location: 3678922-3679216 bp Feature: gene Location: 3679254-3680198 bp Feature: gene Location: 3680297-3681784 bp Ori: QKT82383.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680702-3681392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680702-3681392 bp Feature: gene Location: 3682272-3683252 bp Ori: QKT84085.1 Feature: domain Description: int Location: 3682275-3683202 bp Feature: domain Description: int Location: 3682275-3683202 bp Feature: gene Location: 3683375-3683938 bp Ori: QKT82384.1 Feature: domain Description: YbjK Location: 3683381-3683918 bp Feature: domain Description: YbjK Location: 3683381-3683918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)