myRT

myRT report for GCA_013349085.1_ASM1334908v1

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Seq: CP054783.1 Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p3, complete sequence (87095 bp)
Overview 1 RT 1: 27566-32856 bp Neighborhood of RT #1 [27566, 32870] IncFII_repA DUF2913 RVT-GII PRK10276 umuC Feature: gene Location: 27566-28165 bp Ori: QKT90140.1 Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: domain Description: IncFII_repA Location: 27695-28064 bp Feature: gene Location: 29072-29686 bp Ori: QKT90080.1 Feature: domain Description: DUF2913 Location: 29102-29588 bp Feature: domain Description: DUF291 3 Location: 291 02-29588 bp Feature: gene Location: 30101-31588 bp Ori: QKT90081.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30506-31 1 96 bp Feature: gene Location: 31666-32091 bp Ori: QKT90082.1 Gene: umuD Feature: domain Description: PRK10276 Location: 31717-32077 bp Feature: domain Description: PRK1 0276 Location: 31 71 7-32077 bp Feature: gene Location: 32091-32870 bp Ori: QKT90083.1 Feature: domain Description: umuC Location: 32094-32856 bp Feature: domain Description: umuC Location: 32094-32856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IncFII_repA (pfam02387), DUF2913 (pfam11140), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP054784.1 Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p4, complete sequence (11970 bp)
Overview 1 RT 1: 3696-8773 bp Neighborhood of RT #1 [3696, 8775] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII tolA Feature: gene Location: 3696-3953 bp Ori: QKT90150.1 Feature: domain Description: Cloacin_immun Location: 3702-3939 bp Feature: domain Description: Cloacin_immun Location: 3702 -3939 bp Feature: gene Location: 3963-5648 bp Ori: QKT90151.1 Feature: domain Description: Cloacin Location: 4098-4920 bp Feature: domain Description: Cloacin Location: 4098-492 0 bp Feature: domain Description: E2R135 Location: 4929-5334 bp Feature: domain Description: E2 R135 Location: 492 9-5334 bp Feature: domain Description: Cytotoxic Location: 5388-5637 bp Feature: domain Description: Cytotoxic Location: 5388-5637 bp Feature: gene Location: 5753-7240 bp Ori: QKT90152.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6158-6848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6158-6848 bp Feature: gene Location: 7885-8130 bp Feature: gene Location: 8404-8775 bp Ori: QKT90154.1 Gene: tolA Feature: domain Description: tolA Location: 8512-8773 bp Feature: domain Description: tolA Location: 8512 -8773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII, tolA (PRK09510)

Seq: CP054782.1 Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p2, complete sequence (133771 bp)
Overview 1 RT 1: 23671-28568 bp 2 RT 2: 97680-103033 bp Neighborhood of RT #1 [23671, 29305] DUF1380 RVT_N RVT-GII GIIM HNHc DUF3560 Neighborhood of RT #2 [97680, 103170] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 23671-24093 bp Ori: QKT89931.1 Feature: domain Description: DUF1380 Location: 23674-23968 bp Feature: domain Description: DUF13 80 Location: 23 674-23 968 bp Feature: gene Location: 24090-24281 bp Feature: gene Location: 24595-26262 bp Ori: QKT89933.1 Gene: ltrA Feature: domain Description: RVT_N Location: 24643-24880 bp Feature: domain Description: RVT_N Location: 24643 -24880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24931-25573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2493 1-25573 bp Feature: domain Description: GIIM Note: maturase Location: 25624-25858 bp Feature: domain Description: GIIM Note: maturase Location: 25624-25858 bp Feature: domain Description: HNHc Note: nucleases Location: 26068-26227 bp Feature: domain Description: HNHc Note: nucleases Location: 26068-26227 bp Feature: gene Location: 27662-27892 bp Feature: gene Location: 27944-29305 bp Ori: QKT89935.1 Feature: domain Description: DUF3560 Location: 28211-28568 bp Feature: domain Description: DUF3 560 Location: 28211-28568 bp Feature: gene Location: 97680-98951 bp Ori: QKT89997.1 Feature: domain Description: umuC Location: 97683-98943 bp Feature: domain Description: umuC Location: 97683 -98943 bp Feature: gene Location: 98951-99382 bp Ori: QKT89998.1 Gene: umuD Feature: domain Description: PRK10276 Location: 99002-99365 bp Feature: domain Description: PRK10276 Location: 99002-993 65 bp Feature: gene Location: 99789-101276 bp Ori: QKT89999.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100194-100884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100194-100884 bp Feature: gene Location: 101525-102496 bp Ori: QKT90000.1 Feature: domain Description: StbA Location: 101528-102473 bp Feature: domain Description: StbA Location: 101528-102473 bp Feature: gene Location: 102499-103170 bp Ori: QKT90001.1 Feature: domain Description: Plasmid_stab_B Location: 102514-102721 bp Feature: domain Description: Plasmid_stab_B Location: 102514-102721 bp Feature: domain Description: Plasmid_stab_B Location: 102826-103033 bp Feature: domain Description: Plasmid_stab_B Location: 102826-103 03 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP054780.1 Klebsiella pneumoniae strain KP20194a chromosome, complete genome (5448829 bp)
Overview 1 RT 1: 1217561-1223294 bp 2 RT 2: 1836666-1843137 bp 3 RT 3: 1858878-1866380 bp 4 RT 4: 3109186-3114997 bp 5 RT 5: 3259174-3264538 bp 6 RT 6: 3332166-3335149 bp 7 RT 7: 3679293-3684847 bp Neighborhood of RT #1 [1217561, 1223299] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1836666, 1843151] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [1858878, 1866415] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #4 [3109186, 3115053] umuC PRK10276 RVT-GII PinE Rve Neighborhood of RT #5 [3259174, 3264591] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3332166, 3335149] PRK10597 RVT-GII DinI Neighborhood of RT #7 [3679293, 3684867] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1217561-1218412 bp Ori: QKT85727.1 Feature: domain Description: dam Location: 1217564-1218335 bp Feature: domain Description: dam Location: 1217564 -1218335 bp Feature: gene Location: 1218409-1220793 bp Ori: QKT85728.1 Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: domain Description: Phage_GPA Location: 1218973-1219939 bp Feature: gene Location: 1221271-1222758 bp Ori: QKT85729.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221676-1222366 bp Feature: gene Location: 1222866-1223054 bp Feature: gene Location: 1223066-1223299 bp Ori: QKT85731.1 Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: domain Description: DinI Location: 1223111-1223294 bp Feature: gene Location: 1836666-1838090 bp Ori: QKT86273.1 Gene: sbcB Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: domain Description: SbcB Location: 1836672-1838088 bp Feature: gene Location: 1838271-1839434 bp Ori: QKT86274.1 Gene: dacD Feature: domain Description: dacD Location: 1838274-1839429 bp Feature: domain Description: dacD Location: 1838274 -18394 29 bp Feature: gene Location: 1839952-1841439 bp Ori: QKT86275.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1840357-1841047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 0357-184 104 7 bp Feature: gene Location: 1841521-1841994 bp Ori: QKT86276.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1841524-1841983 bp Feature: domain Description: PRK10016 Location: 184 1524 -184 1983 bp Feature: gene Location: 1842093-1843151 bp Ori: QKT86277.1 Feature: domain Description: YccC Location: 1842099-1843137 bp Feature: domain Description: YccC Location: 184 2099-184 3137 bp Feature: gene Location: 1858878-1859981 bp Ori: QKT86294.1 Feature: domain Description: STKc_PknB_like Location: 1859010-1859451 bp Feature: domain Description: STKc_PknB_like Location: 1859010-18594 51 bp Feature: gene Location: 1860051-1860359 bp Feature: gene Location: 1860540-1861640 bp Ori: QKT86295.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1860723-1861251 bp Feature: gene Location: 1861755-1864001 bp Ori: QKT86296.1 Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: domain Description: AAA_15 Location: 1861758-1862766 bp Feature: gene Location: 1865396-1866415 bp Ori: QKT86297.1 Feature: domain Description: DUF4917 Location: 1865456-1866380 bp Feature: domain Description: DUF4 917 Location: 18654 56-1866380 bp Feature: gene Location: 3109186-3110451 bp Ori: QKT87432.1 Feature: domain Description: umuC Location: 3109189-3110449 bp Feature: domain Description: umuC Location: 3109189-31104 4 9 bp Feature: gene Location: 3110453-3110872 bp Ori: QKT89646.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3110456-3110867 bp Feature: domain Description: PRK10276 Location: 31104 56-3110867 bp Feature: gene Location: 3110952-3112439 bp Ori: QKT87433.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-3112047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3111357-311204 7 bp Feature: gene Location: 3113834-3114295 bp Feature: domain Description: PinE Location: 3113837-3114287 bp Feature: domain Description: PinE Location: 3113837-3114 287 bp Feature: gene Location: 3114349-3115053 bp Ori: QKT87434.1 Feature: domain Description: Rve Location: 3114352-3114997 bp Feature: domain Description: Rve Location: 3114 352-3114 997 bp Feature: gene Location: 3259174-3260439 bp Ori: QKT87578.1 Feature: domain Description: umuC Location: 3259177-3260437 bp Feature: domain Description: umuC Location: 3259177-32604 37 bp Feature: gene Location: 3260442-3260861 bp Ori: QKT87579.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3260445-3260856 bp Feature: domain Description: PRK10276 Location: 32604 4 5-3260856 bp Feature: gene Location: 3260940-3262427 bp Ori: QKT87580.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3261345-3262035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326134 5-3262035 bp Feature: gene Location: 3263042-3263284 bp Ori: QKT87581.1 Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: domain Description: DinI Location: 3263093-3263273 bp Feature: gene Location: 3263455-3264591 bp Ori: QKT89652.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635-3264538 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3263635-3264 538 bp Feature: gene Location: 3332166-3332405 bp Feature: gene Location: 3332468-3332701 bp Ori: QKT87649.1 Feature: domain Description: PRK10597 Location: 3332471-3332696 bp Feature: domain Description: PRK10597 Location: 33324 71-3332696 bp Feature: gene Location: 3332780-3334267 bp Ori: QKT87650.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333185-3333875 bp Feature: gene Location: 3334665-3334907 bp Ori: QKT87651.1 Feature: domain Description: DinI Location: 3334713-3334896 bp Feature: domain Description: DinI Location: 3334 713-3334 896 bp Feature: gene Location: 3334907-3335149 bp Feature: gene Location: 3679293-3680171 bp Ori: QKT89673.1 Feature: domain Description: Phage_CI_repr Location: 3679320-3679503 bp Feature: domain Description: Phage_CI_repr Location: 3679320-3679503 bp Feature: domain Description: Phage_CI_repr Location: 3679632-3679824 bp Feature: domain Description: Phage_CI_repr Location: 3679632-3679824 bp Feature: domain Description: Phage_CI_C Location: 3679851-3680145 bp Feature: domain Description: Phage_CI_C Location: 3679851-368014 5 bp Feature: gene Location: 3680183-3681127 bp Feature: gene Location: 3681226-3682713 bp Ori: QKT87973.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3681631-3682321 bp Feature: gene Location: 3683201-3684181 bp Ori: QKT89674.1 Feature: domain Description: int Location: 3683204-3684131 bp Feature: domain Description: int Location: 3683204 -3684 131 bp Feature: gene Location: 3684304-3684867 bp Ori: QKT87974.1 Feature: domain Description: YbjK Location: 3684310-3684847 bp Feature: domain Description: YbjK Location: 3684 310-3684 84 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons
AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), Rve (COG3316), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)
int (PHA02601), YbjK (COG3226)

Seq: CP054781.1 Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p1, complete sequence (195031 bp)
Overview 1 RT 1: 177537-182521 bp Neighborhood of RT #1 [177537, 182521] DDE_Tnp_1_5 HHA RVT-GII INT_Cre_C Feature: gene Location: 177537-178505 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177639-177972 bp Feature: domain Description: DDE_Tnp_1_5 Location: 177639-177972 bp Feature: gene Location: 178660-178914 bp Ori: QKT89887.1 Feature: domain Description: HHA Location: 178711-178894 bp Feature: domain Description: HHA Location: 178711-178894 bp Feature: gene Location: 179429-180916 bp Ori: QKT89888.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179834-180524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179834-1805 24 bp Feature: gene Location: 181002-182138 bp Ori: QKT89889.1 Feature: domain Description: INT_Cre_C Location: 181425-182079 bp Feature: domain Description: INT_Cre_C Location: 181425 -182079 bp Feature: gene Location: 182204-182521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)