myRT

myRT report for GCA_013357345.1_ASM1335734v1

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Seq: CP054940.1 Escherichia coli strain MS6192 chromosome, complete genome (4879059 bp)
Overview 1 RT 1: 338576-344225 bp 2 RT 2: 4843130-4847983 bp Neighborhood of RT #1 [338576, 344308] InsE PHA02517 RVT-GII RVT-GII GIIM fruct_sucro_rep scrB_fam Neighborhood of RT #2 [4843130, 4847983] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 338576-338860 bp Ori: QKU48233.1 Gene: ykgN_1 Feature: domain Description: InsE Location: 338591-338849 bp Feature: domain Description: InsE Location: 338591 -338849 bp Feature: gene Location: 338902-339327 bp Ori: QKU48234.1 Gene: insO-1 Feature: domain Description: PHA02517 Location: 338923-339262 bp Feature: domain Description: PHA0251 7 Location: 338923-339262 bp Feature: gene Location: 339919-340875 bp Ori: QKU48235.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340192-340828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3401 92-340828 bp Feature: gene Location: 340835-341440 bp Ori: QKU48236.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340850-340922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340850-340922 bp Feature: domain Description: GIIM Note: maturase Location: 340997-341216 bp Feature: domain Description: GIIM Note: maturase Location: 340997-341 21 6 bp Feature: gene Location: 341874-342878 bp Ori: QKU48237.1 Gene: cra_2 Feature: domain Description: fruct_sucro_rep Location: 341895-342873 bp Feature: domain Description: fruct_sucro_rep Location: 341 895-342873 bp Feature: gene Location: 342908-344308 bp Ori: QKU48238.1 Gene: scrB Feature: domain Description: scrB_fam Location: 342953-344225 bp Feature: domain Description: scrB_fam Location: 342953-344225 bp Feature: gene Location: 4843130-4844923 bp Ori: QKU52441.1 Gene: stfR_3 Feature: domain Description: Phage_fiber_2 Location: 4843151-4843265 bp Feature: domain Description: Phage_fiber_2 Location: 48431 51 -4843265 bp Feature: domain Description: Collar Location: 4844243-4844381 bp Feature: domain Description: Collar Location: 4844243-4844381 bp Feature: domain Description: Phage_fiber Location: 4844432-4844471 bp Feature: domain Description: Phage_fiber Location: 4844432-4844471 bp Feature: domain Description: Phage_fiber Location: 4844528-4844567 bp Feature: domain Description: Phage_fiber Location: 4844528-4844567 bp Feature: domain Description: Phage_fiber Location: 4844726-4844765 bp Feature: domain Description: Phage_fiber Location: 4844726-4844765 bp Feature: domain Description: Phage_fiber Location: 4844771-4844801 bp Feature: domain Description: Phage_fiber Location: 4844771 -4844801 bp Feature: gene Location: 4844923-4845507 bp Ori: QKU52442.1 Gene: tfaQ_4 Feature: domain Description: Caudo_TAP Location: 4845139-4845496 bp Feature: domain Description: Caudo_TAP Location: 48451 39-4845496 bp Feature: gene Location: 4845620-4846990 bp Ori: QKU52443.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4845848-4846454 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4845848-4846454 bp Feature: gene Location: 4846968-4847519 bp Ori: QKU52444.1 Feature: domain Description: SLATT_5 Location: 4846977-4847490 bp Feature: domain Description: SLATT_5 Location: 4846977-4847490 bp Feature: gene Location: 4847885-4847983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fruct_sucro_rep (TIGR02417), scrB_fam (TIGR01322), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413)
RVT-UG17, SLATT_5 (pfam18160)