myRT

myRT report for GCA_013357885.1_ASM1335788v1

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Seq: CP053744.1 Vibrio cholerae strain SA3G chromosome 1, complete sequence (3020084 bp)
Overview 1 RT 1: 262227-268277 bp 2 RT 2: 542015-550099 bp Neighborhood of RT #1 [262227, 268277] groES groEL RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [542015, 550122] carB RVT-Retrons Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Feature: gene Location: 262227-262517 bp Ori: QKU54758.1 Feature: domain Description: groES Location: 262230-262515 bp Feature: domain Description: groES Location: 262230-26251 5 bp Feature: gene Location: 262571-264205 bp Ori: QKU54759.1 Gene: groL Feature: domain Description: groEL Location: 262577-264200 bp Feature: domain Description: groEL Location: 262577-264200 bp Feature: gene Location: 265327-266985 bp Ori: QKU54760.1 Gene: ltrA Feature: domain Description: RVT_N Location: 265372-265615 bp Feature: domain Description: RVT_N Location: 265372-26561 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265660-266305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265660-266305 bp Feature: domain Description: GIIM Note: maturase Location: 266356-266590 bp Feature: domain Description: GIIM Note: maturase Location: 266356-266590 bp Feature: domain Description: HNHc Note: nucleases Location: 266809-266968 bp Feature: domain Description: HNHc Note: nucleases Location: 266809-266968 bp Feature: gene Location: 267100-267390 bp Feature: gene Location: 267717-268277 bp Feature: gene Location: 542015-545245 bp Ori: QKU55004.1 Gene: carB Feature: domain Description: carB Location: 542018-545216 bp Feature: domain Description: carB Location: 54201 8-54521 6 bp Feature: gene Location: 545335-545817 bp Feature: gene Location: 546239-547186 bp Ori: QKU55006.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 546422-546968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 546422-546968 bp Feature: gene Location: 547490-548365 bp Feature: gene Location: 548734-550122 bp Ori: QKU55008.1 Feature: domain Description: Tnp_DNA_bind Location: 548761-548929 bp Feature: domain Description: Tnp_DNA_bind Location: 548761 -548929 bp Feature: domain Description: DDE_Tnp_1 Location: 549394-549814 bp Feature: domain Description: DDE_Tnp_1 Location: 549394-54981 4 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 549841-550099 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 549841 -550099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), carB (PRK12815), RVT-Retrons, Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609)
Dimer_Tnp_Tn5 (pfam02281)

Seq: CP053745.1 Vibrio cholerae strain SA3G chromosome 2, complete sequence (1159698 bp)
Overview 1 RT 1: 357000-360729 bp Neighborhood of RT #1 [357000, 360803] RVT-AbiP2 nicotinamidase_related Feature: gene Location: 357000-357242 bp Feature: gene Location: 357425-357976 bp Feature: gene Location: 358163-359662 bp Ori: QKU57432.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 358583-359033 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 358583-359033 bp Feature: gene Location: 359890-360027 bp Feature: gene Location: 360270-360803 bp Ori: QKU57434.1 Feature: domain Description: nicotinamidase_related Location: 360282-360729 bp Feature: domain Description: nicotinamidase_related Location: 3602 82 -36072 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, nicotinamidase_related (cd01014)