myRT

myRT report for GCA_013364115.1_ASM1336411v1

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Seq: CP054913.1 Shigella flexneri strain FDAARGOS_691 chromosome, complete genome (4536577 bp)
Overview 1 RT 1: 1537738-1542501 bp 2 RT 2: 1633174-1639099 bp 3 RT 3: 1840413-1844621 bp 4 RT 4: 2013692-2018747 bp 5 RT 5: 2399958-2404792 bp 6 RT 6: 4296845-4305254 bp Neighborhood of RT #1 [1537738, 1542590] InsE RVT-GII GIIM PHA02517 Terminase_6 Terminase_6C Neighborhood of RT #2 [1633174, 1639101] PHA02517 RVT-GII GIIM InsE adrA Neighborhood of RT #3 [1840413, 1844644] IbrB_like PHA02517 RVT-GII GIIM InsE Rz1 Neighborhood of RT #4 [2013692, 2018773] YbdN InsE RVT-GII GIIM PHA02517 DUF1133 Neighborhood of RT #5 [2399958, 2404792] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Neighborhood of RT #6 [4296845, 4305319] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM InsE zinc_ribbon_11 Feature: gene Location: 1537738-1538025 bp Feature: gene Location: 1538103-1538791 bp Feature: domain Description: InsE Location: 1538112-1538403 bp Feature: domain Description: InsE Location: 1 5381 1 2-1 538403 bp Feature: gene Location: 1539464-1540972 bp Ori: QKV85489.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1539722-1540454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 539722-1 540454 bp Feature: domain Description: GIIM Note: maturase Location: 1540529-1540727 bp Feature: domain Description: GIIM Note: maturase Location: 1 540529-1 540727 bp Feature: gene Location: 1541053-1541541 bp Feature: domain Description: PHA02517 Location: 1541056-1541530 bp Feature: domain Description: PHA0251 7 Location: 1 541 056-1 541 530 bp Feature: gene Location: 1541535-1542590 bp Ori: QKV83037.1 Feature: domain Description: Terminase_6 Location: 1541547-1542000 bp Feature: domain Description: Terminase_6 Location: 1 541 547-1 542000 bp Feature: domain Description: Terminase_6C Location: 1542045-1542501 bp Feature: domain Description: Terminase_6C Location: 1 542045-1 542501 bp Feature: gene Location: 1633174-1634081 bp Feature: gene Location: 1634356-1634835 bp Feature: domain Description: PHA02517 Location: 1634359-1634833 bp Feature: domain Description: PHA0251 7 Location: 1 634359-1 634833 bp Feature: gene Location: 1634919-1636427 bp Ori: QKV85493.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1635177-1635909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6351 77-1 635909 bp Feature: domain Description: GIIM Note: maturase Location: 1635984-1636182 bp Feature: domain Description: GIIM Note: maturase Location: 1 635984-1 6361 82 bp Feature: gene Location: 1637100-1637835 bp Feature: domain Description: InsE Location: 1637103-1637442 bp Feature: domain Description: InsE Location: 1 6371 03-1 637442 bp Feature: gene Location: 1637986-1639101 bp Ori: QKV83112.1 Gene: adrA Feature: domain Description: adrA Location: 1638004-1639099 bp Feature: domain Description: adrA Location: 1 638004-1 639099 bp Feature: gene Location: 1840413-1840922 bp Feature: domain Description: IbrB_like Location: 1840431-1840728 bp Feature: domain Description: IbrB_like Location: 1 840431 -1 840728 bp Feature: gene Location: 1840932-1841420 bp Feature: domain Description: PHA02517 Location: 1840935-1841409 bp Feature: domain Description: PHA0251 7 Location: 1 840935-1 841 409 bp Feature: gene Location: 1841501-1843009 bp Ori: QKV85499.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1841759-1842491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 841 759-1 842491 bp Feature: domain Description: GIIM Note: maturase Location: 1842566-1842764 bp Feature: domain Description: GIIM Note: maturase Location: 1 842566-1 842764 bp Feature: gene Location: 1843682-1844370 bp Feature: domain Description: InsE Location: 1843691-1843982 bp Feature: domain Description: InsE Location: 1 843691 -1 843982 bp Feature: gene Location: 1844453-1844644 bp Ori: QKV85500.1 Feature: domain Description: Rz1 Location: 1844495-1844621 bp Feature: domain Description: Rz1 Location: 1 844495-1 844621 bp Feature: gene Location: 2013692-2014717 bp Feature: domain Description: YbdN Location: 2013698-2014697 bp Feature: domain Description: YbdN Location: 201 3698-201 4697 bp Feature: gene Location: 2014884-2015572 bp Feature: domain Description: InsE Location: 2014893-2015184 bp Feature: domain Description: InsE Location: 201 4893-201 51 84 bp Feature: gene Location: 2016245-2017753 bp Ori: QKV85505.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016503-2017235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 6503-201 7235 bp Feature: domain Description: GIIM Note: maturase Location: 2017310-2017508 bp Feature: domain Description: GIIM Note: maturase Location: 201 731 0-201 7508 bp Feature: gene Location: 2017834-2018322 bp Feature: domain Description: PHA02517 Location: 2017837-2018311 bp Feature: domain Description: PHA0251 7 Location: 201 7837-201 831 1 bp Feature: gene Location: 2018351-2018773 bp Ori: QKV83411.1 Feature: domain Description: DUF1133 Location: 2018354-2018747 bp Feature: domain Description: DUF1 1 33 Location: 201 8354-201 8747 bp Feature: gene Location: 2399958-2400800 bp Ori: QKV85529.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 2400057-2400453 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 2400057-2400453 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 2400459-2400738 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 2400459-2400738 bp Feature: gene Location: 2400986-2401703 bp Feature: domain Description: InsE Location: 2401025-2401274 bp Feature: domain Description: InsE Location: 2401 025-2401 274 bp Feature: gene Location: 2402376-2403884 bp Ori: QKV85530.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402634-2403366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2402634-2403366 bp Feature: domain Description: GIIM Note: maturase Location: 2403441-2403639 bp Feature: domain Description: GIIM Note: maturase Location: 2403441 -2403639 bp Feature: gene Location: 2403965-2404452 bp Feature: domain Description: PHA02517 Location: 2403968-2404139 bp Feature: domain Description: PHA0251 7 Location: 2403968-24041 39 bp Feature: gene Location: 2404535-2404792 bp Feature: gene Location: 4296845-4300963 bp Ori: QKV85236.1 Gene: pic Feature: domain Description: Peptidase_S6 Location: 4296998-4299170 bp Feature: domain Description: Peptidase_S6 Location: 4296998-42991 70 bp Feature: domain Description: autotrans_barl Location: 4299734-4300961 bp Feature: domain Description: autotrans_barl Location: 4299734-4300961 bp Feature: gene Location: 4301128-4301601 bp Feature: domain Description: PHA02517 Location: 4301134-4301599 bp Feature: domain Description: PHA0251 7 Location: 4301 1 34-4301 599 bp Feature: gene Location: 4301691-4303199 bp Ori: QKV85613.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301949-4302681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301 949-4302681 bp Feature: domain Description: GIIM Note: maturase Location: 4302756-4302954 bp Feature: domain Description: GIIM Note: maturase Location: 4302756-4302954 bp Feature: gene Location: 4303872-4304611 bp Feature: domain Description: InsE Location: 4303875-4304214 bp Feature: domain Description: InsE Location: 4303875-430421 4 bp Feature: gene Location: 4304894-4305319 bp Ori: QKV85237.1 Feature: domain Description: zinc_ribbon_11 Location: 4304936-4305254 bp Feature: domain Description: zinc_ribbon_1 1 Location: 4304936-4305254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Terminase_6 (pfam03237), Terminase_6C (pfam17289), adrA (PRK10245), IbrB_like (cd16397), Rz1 (pfam06085), YbdN (COG3969)
DUF1133 (pfam06576), CE4_Ecf1_like_5s (cd10969), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), zinc_ribbon_11 (pfam11682)