myRT

myRT report for GCA_013364155.1_ASM1336415v1

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Seq: CP054916.1 Streptomyces sp. NA02950 chromosome, complete genome (9619720 bp)
Overview 1 RT 1: 2645596-2656920 bp 2 RT 2: 3995786-4003068 bp 3 RT 3: 4569657-4574769 bp 4 RT 4: 5666192-5672073 bp 5 RT 5: 5795560-5801268 bp 6 RT 6: 6183238-6191456 bp 7 RT 7: 6383430-6388422 bp 8 RT 8: 7546649-7550763 bp Neighborhood of RT #1 [2645596, 2656952] HAMP HAMP PRK11107 HAMP PRK11107 PRK11107 PRK11107 PRK11107 HAMP HAMP HAMP HAMP GAF_2 PRK11107 PRK11107 HATPase_RsbW-like PAS GAF_2 GAF_2 SpoIIE RVT-GII GIIM WecE WecE Neighborhood of RT #2 [3995786, 4003076] SRPBCC_8 RVT-GII GIIM PRK00049 PRK00007 Neighborhood of RT #3 [4569657, 4574801] HxlR AzoR RVT-GII GIIM DDE_5 COG5659 HTH_29 HTH_33 Neighborhood of RT #4 [5666192, 5672073] Ugd SCAD_SBCAD RVT-GII GIIM Neighborhood of RT #5 [5795560, 5801279] CtpA smpB RVT-GII GIIM Polyketide_cyc2 DUF2867 AcrR Neighborhood of RT #6 [6183238, 6191476] PRK14507 RVT-GII GIIM Acyl_ACP_Desat pepN_strep_liv Neighborhood of RT #7 [6383430, 6388697] OmpR RVT-GII GIIM PRK10621 near_uncomplex Neighborhood of RT #8 [7546649, 7550763] DUF397 IS285 RVT-GII KOG4768 Feature: gene Location: 2645596-2651169 bp Ori: QKV92223.1 Feature: domain Description: HAMP Location: 2645689-2645812 bp Feature: domain Description: HAMP Location: 2645689-264581 2 bp Feature: domain Description: HAMP Location: 2645956-2646124 bp Feature: domain Description: HAMP Location: 2645956-26461 24 bp Feature: domain Description: PRK11107 Location: 2646256-2646418 bp Feature: domain Description: PRK1 1 1 07 Location: 2646256-264641 8 bp Feature: domain Description: HAMP Location: 2646460-2646691 bp Feature: domain Description: HAMP Location: 2646460-2646691 bp Feature: domain Description: PRK11107 Location: 2646805-2646970 bp Feature: domain Description: PRK1 1 1 07 Location: 2646805-2646970 bp Feature: domain Description: PRK11107 Location: 2647081-2647243 bp Feature: domain Description: PRK1 1 1 07 Location: 2647081 -2647243 bp Feature: domain Description: PRK11107 Location: 2647363-2647519 bp Feature: domain Description: PRK1 1 1 07 Location: 2647363-264751 9 bp Feature: domain Description: PRK11107 Location: 2647639-2647798 bp Feature: domain Description: PRK1 1 1 07 Location: 2647639-2647798 bp Feature: domain Description: HAMP Location: 2647840-2648071 bp Feature: domain Description: HAMP Location: 2647840-2648071 bp Feature: domain Description: HAMP Location: 2648116-2648347 bp Feature: domain Description: HAMP Location: 26481 1 6-2648347 bp Feature: domain Description: HAMP Location: 2648392-2648623 bp Feature: domain Description: HAMP Location: 2648392-2648623 bp Feature: domain Description: HAMP Location: 2648668-2648884 bp Feature: domain Description: HAMP Location: 2648668-2648884 bp Feature: domain Description: GAF_2 Location: 2648965-2649403 bp Feature: domain Description: GAF_2 Location: 2648965-2649403 bp Feature: domain Description: PRK11107 Location: 2649580-2650417 bp Feature: domain Description: PRK1 1 1 07 Location: 2649580-265041 7 bp Feature: domain Description: PRK11107 Location: 2650807-2651164 bp Feature: domain Description: PRK1 1 1 07 Location: 2650807-2651 1 64 bp Feature: gene Location: 2651421-2654048 bp Ori: QKV97541.1 Feature: domain Description: HATPase_RsbW-like Location: 2651547-2651805 bp Feature: domain Description: HATPase_RsbW-like Location: 2651 547-2651 805 bp Feature: domain Description: PAS Location: 2651901-2652192 bp Feature: domain Description: PAS Location: 2651 901 -26521 92 bp Feature: domain Description: GAF_2 Location: 2652315-2652720 bp Feature: domain Description: GAF_2 Location: 265231 5-2652720 bp Feature: domain Description: GAF_2 Location: 2652912-2653287 bp Feature: domain Description: GAF_2 Location: 265291 2-2653287 bp Feature: domain Description: SpoIIE Location: 2653458-2654028 bp Feature: domain Description: SpoIIE Location: 2653458-2654028 bp Feature: gene Location: 2654222-2655637 bp Ori: QKV92224.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654570-2655185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2654570-26551 85 bp Feature: domain Description: GIIM Note: maturase Location: 2655242-2655467 bp Feature: domain Description: GIIM Note: maturase Location: 2655242-2655467 bp Feature: gene Location: 2656245-2656952 bp Ori: QKV97542.1 Feature: domain Description: WecE Location: 2656287-2656551 bp Feature: domain Description: WecE Location: 2656287-2656551 bp Feature: domain Description: WecE Location: 2656590-2656920 bp Feature: domain Description: WecE Location: 2656590-2656920 bp Feature: gene Location: 3995786-3996895 bp Ori: QKV93279.1 Feature: domain Description: SRPBCC_8 Location: 3996092-3996485 bp Feature: domain Description: SRPBCC_8 Location: 3996092-3996485 bp Feature: gene Location: 3996888-3997478 bp Feature: gene Location: 3997624-3999039 bp Ori: QKV93281.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997972-3998587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3997972-3998587 bp Feature: domain Description: GIIM Note: maturase Location: 3998644-3998869 bp Feature: domain Description: GIIM Note: maturase Location: 3998644-3998869 bp Feature: gene Location: 3999534-4000727 bp Ori: QKV93282.1 Gene: tuf Feature: domain Description: PRK00049 Location: 3999540-4000722 bp Feature: domain Description: PRK00049 Location: 3999540-4000722 bp Feature: gene Location: 4000956-4003076 bp Ori: QKV93283.1 Gene: fusA Feature: domain Description: PRK00007 Location: 4000971-4003068 bp Feature: domain Description: PRK00007 Location: 4000971 -4003068 bp Feature: gene Location: 4569657-4570037 bp Ori: QKV93735.1 Feature: domain Description: HxlR Location: 4569702-4570005 bp Feature: domain Description: HxlR Location: 4569702-4570005 bp Feature: gene Location: 4570153-4570806 bp Ori: QKV93736.1 Feature: domain Description: AzoR Location: 4570156-4570723 bp Feature: domain Description: AzoR Location: 45701 56-4570723 bp Feature: gene Location: 4570914-4572329 bp Ori: QKV93737.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4571262-4571877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4571 262-4571 877 bp Feature: domain Description: GIIM Note: maturase Location: 4571934-4572159 bp Feature: domain Description: GIIM Note: maturase Location: 4571 934-45721 59 bp Feature: gene Location: 4572733-4574142 bp Ori: QKV93738.1 Feature: domain Description: DDE_5 Location: 4572796-4573558 bp Feature: domain Description: DDE_5 Location: 4572796-4573558 bp Feature: domain Description: COG5659 Location: 4573726-4573882 bp Feature: domain Description: COG5659 Location: 4573726-4573882 bp Feature: gene Location: 4574307-4574801 bp Ori: QKV93739.1 Feature: domain Description: HTH_29 Location: 4574370-4574538 bp Feature: domain Description: HTH_29 Location: 4574370-4574538 bp Feature: domain Description: HTH_33 Location: 4574595-4574769 bp Feature: domain Description: HTH_33 Location: 4574595-4574769 bp Feature: gene Location: 5666192-5667532 bp Ori: QKV94580.1 Feature: domain Description: Ugd Location: 5666204-5667476 bp Feature: domain Description: Ugd Location: 5666204-5667476 bp Feature: gene Location: 5667754-5668860 bp Ori: QKV97806.1 Feature: domain Description: SCAD_SBCAD Location: 5667757-5668855 bp Feature: domain Description: SCAD_SBCAD Location: 5667757-5668855 bp Feature: gene Location: 5669486-5670901 bp Ori: QKV94581.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5669834-5670449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5669834-5670449 bp Feature: domain Description: GIIM Note: maturase Location: 5670506-5670731 bp Feature: domain Description: GIIM Note: maturase Location: 5670506-5670731 bp Feature: gene Location: 5671544-5671768 bp Feature: gene Location: 5671867-5672073 bp Feature: gene Location: 5795560-5796762 bp Ori: QKV94654.1 Feature: domain Description: CtpA Location: 5795779-5796718 bp Feature: domain Description: CtpA Location: 5795779-579671 8 bp Feature: gene Location: 5796781-5797260 bp Ori: QKV94655.1 Gene: smpB Feature: domain Description: smpB Location: 5796802-5797234 bp Feature: domain Description: smpB Location: 5796802-5797234 bp Feature: gene Location: 5798225-5799640 bp Ori: QKV94656.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5798573-5799188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5798573-57991 88 bp Feature: domain Description: GIIM Note: maturase Location: 5799245-5799470 bp Feature: domain Description: GIIM Note: maturase Location: 5799245-5799470 bp Feature: gene Location: 5799726-5800622 bp Ori: QKV94657.1 Feature: domain Description: Polyketide_cyc2 Location: 5799753-5800041 bp Feature: domain Description: Polyketide_cyc2 Location: 5799753-5800041 bp Feature: domain Description: DUF2867 Location: 5800317-5800545 bp Feature: domain Description: DUF2867 Location: 580031 7-5800545 bp Feature: gene Location: 5800674-5801279 bp Ori: QKV94658.1 Feature: domain Description: AcrR Location: 5800680-5801268 bp Feature: domain Description: AcrR Location: 5800680-5801 268 bp Feature: gene Location: 6183238-6185406 bp Ori: QKV94954.1 Gene: malQ Feature: domain Description: PRK14507 Location: 6183253-6185332 bp Feature: domain Description: PRK1 4507 Location: 61 83253-61 85332 bp Feature: gene Location: 6185403-6185645 bp Feature: gene Location: 6186156-6187571 bp Ori: QKV94956.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186504-6187119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 86504-61 871 1 9 bp Feature: domain Description: GIIM Note: maturase Location: 6187176-6187401 bp Feature: domain Description: GIIM Note: maturase Location: 61 871 76-61 87401 bp Feature: gene Location: 6187835-6188809 bp Ori: QKV94957.1 Feature: domain Description: Acyl_ACP_Desat Location: 6187886-6188750 bp Feature: domain Description: Acyl_ACP_Desat Location: 61 87886-61 88750 bp Feature: gene Location: 6188906-6191476 bp Ori: QKV94958.1 Gene: pepN Feature: domain Description: pepN_strep_liv Location: 6188921-6191456 bp Feature: domain Description: pepN_strep_liv Location: 61 88921 -61 91 456 bp Feature: gene Location: 6383430-6384185 bp Ori: QKV95100.1 Feature: domain Description: OmpR Location: 6383436-6384174 bp Feature: domain Description: OmpR Location: 6383436-63841 74 bp Feature: gene Location: 6384420-6385028 bp Feature: gene Location: 6385544-6386959 bp Ori: QKV95102.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6385892-6386507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6385892-6386507 bp Feature: domain Description: GIIM Note: maturase Location: 6386564-6386789 bp Feature: domain Description: GIIM Note: maturase Location: 6386564-6386789 bp Feature: gene Location: 6387107-6387889 bp Ori: QKV95103.1 Feature: domain Description: PRK10621 Location: 6387134-6387884 bp Feature: domain Description: PRK1 0621 Location: 63871 34-6387884 bp Feature: gene Location: 6388050-6388697 bp Ori: QKV95104.1 Feature: domain Description: near_uncomplex Location: 6388068-6388422 bp Feature: domain Description: near_uncomplex Location: 6388068-6388422 bp Feature: gene Location: 7546649-7546861 bp Ori: QKV97972.1 Feature: domain Description: DUF397 Location: 7546676-7546820 bp Feature: domain Description: DUF397 Location: 7546676-7546820 bp Feature: gene Location: 7546919-7548190 bp Ori: QKV95986.1 Feature: domain Description: IS285 Location: 7547009-7548182 bp Feature: domain Description: IS285 Location: 7547009-75481 82 bp Feature: gene Location: 7548602-7549954 bp Ori: QKV95987.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7548863-7549655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7548863-7549655 bp Feature: domain Description: KOG4768 Location: 7549748-7549928 bp Feature: domain Description: KOG4768 Location: 7549748-7549928 bp Feature: gene Location: 7550063-7550209 bp Feature: gene Location: 7550425-7550763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAMP (smart00304), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), GAF_2 (pfam13185), HATPase_RsbW-like (cd16936), PAS (smart00091), SpoIIE (pfam07228), RVT-GII, GIIM (pfam08388), WecE (COG0399), SRPBCC_8 (cd07817)
PRK00049 (elongation factor Tu; Reviewed), PRK00007 (elongation factor G; Reviewed), HxlR (pfam01638), AzoR (COG1182), DDE_5 (pfam13546), COG5659 (SRSO17 transposase ), HTH_29 (pfam13551), HTH_33 (pfam13592), Ugd (COG1004), SCAD_SBCAD (cd01158)
CtpA (COG0793), smpB (TIGR00086), Polyketide_cyc2 (pfam10604), DUF2867 (pfam11066), AcrR (COG1309), PRK14507 (malto-oligosyltrehalose synthase), Acyl_ACP_Desat (cd01050), pepN_strep_liv (TIGR02412), OmpR (COG0745), PRK10621 (hypothetical protein; Provisional)
near_uncomplex (TIGR04222), DUF397 (pfam04149), IS285 (COG3328), KOG4768 (KOG4768, Mitochondrial mRNA maturase )