myRT

myRT report for GCA_013364195.1_ASM1336419v1

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Seq: CP054918.1 Streptomyces sp. NA04227 chromosome, complete genome (7894562 bp)
Overview 1 RT 1: 1867398-1875646 bp 2 RT 2: 5875390-5881428 bp Neighborhood of RT #1 [1867398, 1875855] AbiEii RVT-UNC PRK09694 PRK09694 Cas3_C CRISPR_Cse1 Neighborhood of RT #2 [5875390, 5881454] HDGYP HTH_XRE RVT_N RVT-GII GIIM HNH rve PRK09183 Feature: gene Location: 1867398-1868705 bp Feature: gene Location: 1868712-1869650 bp Ori: QKW06322.1 Feature: domain Description: AbiEii Location: 1868862-1869465 bp Feature: domain Description: AbiEii Location: 1 868862-1 869465 bp Feature: gene Location: 1869673-1870911 bp Ori: QKW06323.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1870090-1870390 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 870090-1 870390 bp Feature: gene Location: 1871002-1873866 bp Ori: QKW06324.1 Feature: domain Description: PRK09694 Location: 1871065-1872169 bp Feature: domain Description: PRK09694 Location: 1 871 065-1 8721 69 bp Feature: domain Description: PRK09694 Location: 1872358-1873141 bp Feature: domain Description: PRK09694 Location: 1 872358-1 8731 41 bp Feature: domain Description: Cas3_C Location: 1873564-1873846 bp Feature: domain Description: Cas3_C Location: 1 873564-1 873846 bp Feature: gene Location: 1874074-1875855 bp Ori: QKW06325.1 Gene: casA Feature: domain Description: CRISPR_Cse1 Location: 1874083-1875646 bp Feature: domain Description: CRISPR_Cse1 Location: 1 874083-1 875646 bp Feature: gene Location: 5875390-5876724 bp Ori: QKW11154.1 Feature: domain Description: HDGYP Location: 5875993-5876554 bp Feature: domain Description: HDGYP Location: 5875993-5876554 bp Feature: gene Location: 5876738-5877040 bp Feature: domain Description: HTH_XRE Location: 5876774-5876888 bp Feature: domain Description: HTH_XRE Location: 5876774-5876888 bp Feature: gene Location: 5877716-5879479 bp Ori: QKW09162.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5877788-5878028 bp Feature: domain Description: RVT_N Location: 5877788-5878028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878085-5878745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5878085-5878745 bp Feature: domain Description: GIIM Note: maturase Location: 5878805-5879030 bp Feature: domain Description: GIIM Note: maturase Location: 5878805-5879030 bp Feature: domain Description: HNH Note: nucleases Location: 5879354-5879456 bp Feature: domain Description: HNH Note: nucleases Location: 5879354-5879456 bp Feature: gene Location: 5879590-5880687 bp Feature: domain Description: rve Location: 5879689-5880070 bp Feature: domain Description: rve Location: 5879689-5880070 bp Feature: gene Location: 5880684-5881454 bp Ori: QKW09163.1 Feature: domain Description: PRK09183 Location: 5880693-5881428 bp Feature: domain Description: PRK091 83 Location: 5880693-5881 428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-UNC/RVT-UG23/RVT-UG7/RVT-UG13(RVT-UNC), PRK09694 (CRISPR-associated helicase/endonuclease Cas3), Cas3_C (pfam18395), CRISPR_Cse1 (pfam09481), HDGYP (COG2206), HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
HNH (pfam01844), rve (pfam00665), PRK09183 (transposase/IS protein; Provisional)