myRT

myRT report for GCA_013364335.1_ASM1336433v1

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Seq: CP054929.1 Streptomyces sp. NA00687 chromosome, complete genome (9069632 bp)
Overview 1 RT 1: 141666-146639 bp 2 RT 2: 4694271-4702684 bp Neighborhood of RT #1 [141666, 148663] DDE_5 RVT_N RVT-GII GIIM COG5659 HTH_XRE Neighborhood of RT #2 [4694271, 4702833] AbiEii RVT-UNC PRK09694 Cas3_C CRISPR_Cse1 Feature: gene Location: 141666-142184 bp Feature: gene Location: 142418-143407 bp Feature: domain Description: DDE_5 Location: 142484-143120 bp Feature: domain Description: DDE_5 Location: 1 42484-1 431 20 bp Feature: gene Location: 144043-145596 bp Ori: QKW48282.1 Gene: ltrA Feature: domain Description: RVT_N Location: 144133-144370 bp Feature: domain Description: RVT_N Location: 1 441 33-1 44370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144430-145087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44430-1 45087 bp Feature: domain Description: GIIM Note: maturase Location: 145147-145378 bp Feature: domain Description: GIIM Note: maturase Location: 1 451 47-1 45378 bp Feature: gene Location: 145671-145865 bp Feature: domain Description: COG5659 Location: 145674-145800 bp Feature: domain Description: COG5659 Location: 1 45674-1 45800 bp Feature: gene Location: 146423-148663 bp Ori: QKW48283.1 Feature: domain Description: HTH_XRE Location: 146498-146639 bp Feature: domain Description: HTH_XRE Location: 1 46498-1 46639 bp Feature: gene Location: 4694271-4695623 bp Feature: gene Location: 4695646-4696536 bp Ori: QKW54632.1 Feature: domain Description: AbiEii Location: 4695709-4696315 bp Feature: domain Description: AbiEii Location: 4695709-469631 5 bp Feature: gene Location: 4696633-4697820 bp Ori: QKW54633.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 4697017-4697293 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 469701 7-4697293 bp Feature: gene Location: 4697950-4700835 bp Ori: QKW51349.1 Feature: domain Description: PRK09694 Location: 4698028-4700116 bp Feature: domain Description: PRK09694 Location: 4698028-47001 1 6 bp Feature: domain Description: Cas3_C Location: 4700551-4700812 bp Feature: domain Description: Cas3_C Location: 4700551 -470081 2 bp Feature: gene Location: 4701121-4702833 bp Gene: casA Feature: domain Description: CRISPR_Cse1 Location: 4701124-4702684 bp Feature: domain Description: CRISPR_Cse1 Location: 4701 1 24-4702684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5659 (SRSO17 transposase ), HTH_XRE (smart00530), AbiEii (pfam08843), RVT-UG26/RVT-UG7/RVT-UG23/RVT-CRISPR(RVT-UNC), PRK09694 (CRISPR-associated helicase/endonuclease Cas3), Cas3_C (pfam18395)
CRISPR_Cse1 (pfam09481)