myRT

myRT report for GCA_013371705.1_ASM1337170v1

Download annotations/find similar RTs

Seq: CP055247.1 Citrobacter freundii strain ZY198 chromosome, complete genome (4997964 bp)
Overview 1 RT 1: 1185318-1189361 bp 2 RT 2: 1616127-1620984 bp 3 RT 3: 2276556-2280998 bp 4 RT 4: 3894717-3899911 bp Neighborhood of RT #1 [1185318, 1189361] Inovirus_Gp2 InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1616127, 1621037] CcmD PRK13150 RVT-GII GIIM PRK13150 nrfE Neighborhood of RT #3 [2276556, 2280998] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [3894717, 3899922] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 1185318-1185521 bp Ori: QKX80779.1 Feature: domain Description: Inovirus_Gp2 Location: 1185375-1185516 bp Feature: domain Description: Inovirus_Gp2 Location: 1 1 85375-1 1 8551 6 bp Feature: gene Location: 1185589-1186277 bp Feature: domain Description: InsE Location: 1185598-1185883 bp Feature: domain Description: InsE Location: 1 1 85598-1 1 85883 bp Feature: gene Location: 1186950-1188458 bp Ori: QKX84130.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1187208-1187940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 87208-1 1 87940 bp Feature: domain Description: GIIM Note: maturase Location: 1188015-1188213 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 8801 5-1 1 8821 3 bp Feature: gene Location: 1188539-1189027 bp Feature: domain Description: PHA02517 Location: 1188542-1189007 bp Feature: domain Description: PHA0251 7 Location: 1 1 88542-1 1 89007 bp Feature: gene Location: 1189053-1189361 bp Feature: gene Location: 1616127-1616339 bp Ori: QKX81125.1 Gene: ccmD Feature: domain Description: CcmD Location: 1616136-1616334 bp Feature: domain Description: CcmD Location: 1 61 61 36-1 61 6334 bp Feature: gene Location: 1616336-1616645 bp Feature: domain Description: PRK13150 Location: 1616339-1616621 bp Feature: domain Description: PRK1 31 50 Location: 1 61 6339-1 61 6621 bp Feature: gene Location: 1617293-1618801 bp Ori: QKX84145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617551-1618283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 7551 -1 61 8283 bp Feature: domain Description: GIIM Note: maturase Location: 1618358-1618556 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 8358-1 61 8556 bp Feature: gene Location: 1618873-1619085 bp Feature: domain Description: PRK13150 Location: 1618888-1619083 bp Feature: domain Description: PRK1 31 50 Location: 1 61 8888-1 61 9083 bp Feature: gene Location: 1619082-1621037 bp Ori: QKX81126.1 Feature: domain Description: nrfE Location: 1619241-1620984 bp Feature: domain Description: nrfE Location: 1 61 9241 -1 620984 bp Feature: gene Location: 2276556-2276999 bp Feature: gene Location: 2277028-2277516 bp Feature: domain Description: PHA02517 Location: 2277031-2277496 bp Feature: domain Description: PHA0251 7 Location: 2277031 -2277496 bp Feature: gene Location: 2277597-2279105 bp Ori: QKX84178.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277855-2278587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277855-2278587 bp Feature: domain Description: GIIM Note: maturase Location: 2278662-2278860 bp Feature: domain Description: GIIM Note: maturase Location: 2278662-2278860 bp Feature: gene Location: 2279778-2280466 bp Feature: domain Description: InsE Location: 2279787-2280072 bp Feature: domain Description: InsE Location: 2279787-2280072 bp Feature: gene Location: 2280534-2280998 bp Feature: gene Location: 3894717-3895721 bp Ori: QKX83173.1 Feature: domain Description: fruct_sucro_rep Location: 3894738-3895716 bp Feature: domain Description: fruct_sucro_rep Location: 3894738-389571 6 bp Feature: gene Location: 3895857-3895990 bp Feature: gene Location: 3896155-3897663 bp Ori: QKX84249.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3896413-3897145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389641 3-38971 45 bp Feature: domain Description: GIIM Note: maturase Location: 3897220-3897418 bp Feature: domain Description: GIIM Note: maturase Location: 3897220-389741 8 bp Feature: gene Location: 3898336-3898761 bp Feature: domain Description: PHA02517 Location: 3898426-3898762 bp Feature: domain Description: PHA0251 7 Location: 3898426-3898762 bp Feature: gene Location: 3898771-3899922 bp Ori: QKX83174.1 Feature: domain Description: HTH_38 Location: 3898780-3898894 bp Feature: domain Description: HTH_38 Location: 3898780-3898894 bp Feature: domain Description: Tra8 Location: 3898930-3899911 bp Feature: domain Description: Tra8 Location: 3898930-389991 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), CcmD (pfam04995), PRK13150 (cytochrome c maturation protein CcmE), nrfE (TIGR00353), fruct_sucro_rep (TIGR02417), HTH_38 (pfam13936)
Tra8 (COG2826)