myRT

myRT report for GCA_013371725.1_ASM1337172v1

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Seq: CP055256.1 Escherichia coli strain AH25 chromosome, complete genome (5146159 bp)
Overview 1 RT 1: 1510390-1512832 bp 2 RT 2: 2009943-2013925 bp 3 RT 3: 3946156-3951928 bp Neighborhood of RT #1 [1510390, 1512831] COG4930 PHA02517 RVT-GII IS285 RAYT Neighborhood of RT #2 [2009943, 2013951] Asparaginase_2 RVT-GII DcuC Neighborhood of RT #3 [3946156, 3952044] Psu RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 1510390-1510719 bp Feature: domain Description: COG4930 Location: 1510393-1510717 bp Feature: domain Description: COG4930 Location: 1 51 0393-1 51 071 7 bp Feature: gene Location: 1510723-1511274 bp Feature: domain Description: PHA02517 Location: 1510729-1511263 bp Feature: domain Description: PHA0251 7 Location: 1 51 0729-1 51 1 263 bp Feature: gene Location: 1511423-1511885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1511435-1511630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 1 435-1 51 1 630 bp Feature: gene Location: 1512028-1512695 bp Feature: domain Description: IS285 Location: 1512058-1512436 bp Feature: domain Description: IS285 Location: 1 51 2058-1 51 2436 bp Feature: gene Location: 1512703-1512831 bp Feature: domain Description: RAYT Location: 1512706-1512832 bp Feature: domain Description: RAYT Location: 1 51 2706-1 51 2832 bp Feature: gene Location: 2009943-2010974 bp Ori: QKX86375.1 Feature: domain Description: Asparaginase_2 Location: 2010033-2010966 bp Feature: domain Description: Asparaginase_2 Location: 201 0033-201 0966 bp Feature: gene Location: 2011301-2011450 bp Feature: gene Location: 2011498-2011944 bp Ori: QKX84614.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2011804-2011906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 1 804-201 1 906 bp Feature: gene Location: 2012310-2012537 bp Feature: gene Location: 2012590-2013951 bp Ori: QKX86377.1 Gene: dcuC Feature: domain Description: DcuC Location: 2012593-2013925 bp Feature: domain Description: DcuC Location: 201 2593-201 3925 bp Feature: gene Location: 3946156-3946596 bp Feature: domain Description: Psu Location: 3946165-3946579 bp Feature: domain Description: Psu Location: 39461 65-3946579 bp Feature: gene Location: 3946899-3947639 bp Feature: gene Location: 3947636-3949264 bp Ori: QKX88064.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3948044-3948473 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3948044-3948473 bp Feature: gene Location: 3949257-3950441 bp Ori: QKX88065.1 Feature: domain Description: PRK09692 Location: 3949263-3950418 bp Feature: domain Description: PRK09692 Location: 3949263-395041 8 bp Feature: gene Location: 3950767-3952044 bp Ori: QKX88066.1 Feature: domain Description: Phage_int_SAM_5 Location: 3951079-3951316 bp Feature: domain Description: Phage_int_SAM_5 Location: 3951 079-3951 31 6 bp Feature: domain Description: INT_C_like_1 Location: 3951412-3951928 bp Feature: domain Description: INT_C_like_1 Location: 3951 41 2-3951 928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4930 (Predicted ATP-dependent Lon-type protease ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, IS285 (COG3328), RAYT (COG1943), Asparaginase_2 (pfam01112), DcuC (TIGR00771), Psu (pfam07455), RVT-UG7, PRK09692 (Integrase; provisional)
Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)