myRT

myRT report for GCA_013372345.1_ASM1337234v1

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Seq: CP054224.1 Escherichia coli strain EcPF16 chromosome, complete genome (4721932 bp)
Overview 1 RT 1: 76194-81541 bp 2 RT 2: 614879-622075 bp 3 RT 3: 829093-833868 bp 4 RT 4: 2276425-2281259 bp 5 RT 5: 2683077-2688979 bp 6 RT 6: 3559207-3564627 bp 7 RT 7: 3651550-3654848 bp 8 RT 8: 4034810-4039077 bp 9 RT 9: 4044874-4050121 bp Neighborhood of RT #1 [76194, 81552] IS5 PHA02517 RVT-GII GIIM HTH_38 Tra8 Neighborhood of RT #2 [614879, 622080] FimA Fimbrial InsE RVT-GII GIIM PHA02517 FimD Neighborhood of RT #3 [829093, 833870] type_II_gspE PHA02517 RVT-GII GIIM PHA02517 LomR Neighborhood of RT #4 [2276425, 2281329] dmsA_ynfE InsE RVT-GII GIIM PHA02517 PRK14849 Neighborhood of RT #5 [2683077, 2688981] YbbK YbgA PHA02517 RVT-GII GIIM InsE PRK15313 PRK15313 Neighborhood of RT #6 [3559207, 3564737] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 IS285 Neighborhood of RT #7 [3651550, 3654848] InsE InsE RVT-GII GIIM PHA02517 Neighborhood of RT #8 [4034810, 4039100] AlpA InsE RVT-GII GIIM PHA02517 HTH_XRE Neighborhood of RT #9 [4044874, 4050132] fruct_sucro_rep RVT-GII GIIM HTH_38 Tra8 Feature: gene Location: 76194-77174 bp Ori: QKY35805.1 Feature: domain Description: IS5 Location: 76380-77151 bp Feature: domain Description: IS5 Location: 76380-771 51 bp Feature: gene Location: 77225-77701 bp Feature: domain Description: PHA02517 Location: 77228-77693 bp Feature: domain Description: PHA0251 7 Location: 77228-77693 bp Feature: gene Location: 77782-79290 bp Ori: QKY35806.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78040-78772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78040-78772 bp Feature: domain Description: GIIM Note: maturase Location: 78847-79045 bp Feature: domain Description: GIIM Note: maturase Location: 78847-79045 bp Feature: gene Location: 79963-80392 bp Feature: gene Location: 80401-81552 bp Ori: QKY35807.1 Feature: domain Description: HTH_38 Location: 80410-80524 bp Feature: domain Description: HTH_38 Location: 8041 0-80524 bp Feature: domain Description: Tra8 Location: 80560-81541 bp Feature: domain Description: Tra8 Location: 80560-81 541 bp Feature: gene Location: 614879-615970 bp Ori: QKY36282.1 Feature: domain Description: FimA Location: 614933-615188 bp Feature: domain Description: FimA Location: 61 4933-61 51 88 bp Feature: domain Description: Fimbrial Location: 615515-615965 bp Feature: domain Description: Fimbrial Location: 61 551 5-61 5965 bp Feature: gene Location: 616052-616791 bp Feature: domain Description: InsE Location: 616055-616394 bp Feature: domain Description: InsE Location: 61 6055-61 6394 bp Feature: gene Location: 617464-618972 bp Ori: QKY36283.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 617722-618454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 7722-61 8454 bp Feature: domain Description: GIIM Note: maturase Location: 618529-618727 bp Feature: domain Description: GIIM Note: maturase Location: 61 8529-61 8727 bp Feature: gene Location: 619062-619535 bp Feature: domain Description: PHA02517 Location: 619068-619533 bp Feature: domain Description: PHA0251 7 Location: 61 9068-61 9533 bp Feature: gene Location: 619579-622080 bp Feature: domain Description: FimD Location: 619609-622075 bp Feature: domain Description: FimD Location: 61 9609-622075 bp Feature: gene Location: 829093-829497 bp Feature: domain Description: type_II_gspE Location: 829135-829498 bp Feature: domain Description: type_II_gspE Location: 8291 35-829498 bp Feature: gene Location: 829675-830163 bp Feature: domain Description: PHA02517 Location: 829678-830128 bp Feature: domain Description: PHA0251 7 Location: 829678-8301 28 bp Feature: gene Location: 830244-831752 bp Ori: QKY36481.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830502-831234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830502-831 234 bp Feature: domain Description: GIIM Note: maturase Location: 831309-831507 bp Feature: domain Description: GIIM Note: maturase Location: 831 309-831 507 bp Feature: gene Location: 832425-832766 bp Feature: domain Description: PHA02517 Location: 832446-832767 bp Feature: domain Description: PHA0251 7 Location: 832446-832767 bp Feature: gene Location: 833133-833870 bp Ori: QKY36482.1 Feature: domain Description: LomR Location: 833136-833868 bp Feature: domain Description: LomR Location: 8331 36-833868 bp Feature: gene Location: 2276425-2277237 bp Feature: domain Description: dmsA_ynfE Location: 2276428-2277235 bp Feature: domain Description: dmsA_ynfE Location: 2276428-2277235 bp Feature: gene Location: 2277294-2278033 bp Feature: domain Description: InsE Location: 2277297-2277636 bp Feature: domain Description: InsE Location: 2277297-2277636 bp Feature: gene Location: 2278706-2280214 bp Ori: QKY37708.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278964-2279696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278964-2279696 bp Feature: domain Description: GIIM Note: maturase Location: 2279771-2279969 bp Feature: domain Description: GIIM Note: maturase Location: 2279771 -2279969 bp Feature: gene Location: 2280304-2280777 bp Feature: domain Description: PHA02517 Location: 2280310-2280775 bp Feature: domain Description: PHA0251 7 Location: 228031 0-2280775 bp Feature: gene Location: 2280818-2281329 bp Feature: domain Description: PRK14849 Location: 2280833-2281259 bp Feature: domain Description: PRK1 4849 Location: 2280833-2281 259 bp Feature: gene Location: 2683077-2684036 bp Ori: QKY38034.1 Feature: domain Description: YbbK Location: 2683095-2683542 bp Feature: domain Description: YbbK Location: 2683095-2683542 bp Feature: domain Description: YbgA Location: 2683548-2684025 bp Feature: domain Description: YbgA Location: 2683548-2684025 bp Feature: gene Location: 2684302-2684775 bp Feature: domain Description: PHA02517 Location: 2684308-2684773 bp Feature: domain Description: PHA0251 7 Location: 2684308-2684773 bp Feature: gene Location: 2684865-2686373 bp Ori: QKY38035.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2685123-2685855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26851 23-2685855 bp Feature: domain Description: GIIM Note: maturase Location: 2685930-2686128 bp Feature: domain Description: GIIM Note: maturase Location: 2685930-26861 28 bp Feature: gene Location: 2687046-2687785 bp Feature: domain Description: InsE Location: 2687049-2687388 bp Feature: domain Description: InsE Location: 2687049-2687388 bp Feature: gene Location: 2687842-2688981 bp Feature: domain Description: PRK15313 Location: 2687977-2688457 bp Feature: domain Description: PRK1 531 3 Location: 2687977-2688457 bp Feature: domain Description: PRK15313 Location: 2688505-2688979 bp Feature: domain Description: PRK1 531 3 Location: 2688505-2688979 bp Feature: gene Location: 3559207-3560358 bp Ori: QKY39879.1 Feature: domain Description: HTH_38 Location: 3559225-3559330 bp Feature: domain Description: HTH_38 Location: 3559225-3559330 bp Feature: domain Description: Tra8 Location: 3559366-3560347 bp Feature: domain Description: Tra8 Location: 3559366-3560347 bp Feature: gene Location: 3560369-3560791 bp Feature: domain Description: PHA02517 Location: 3560456-3560792 bp Feature: domain Description: PHA0251 7 Location: 3560456-3560792 bp Feature: gene Location: 3561464-3562972 bp Ori: QKY38788.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3561722-3562454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3561 722-3562454 bp Feature: domain Description: GIIM Note: maturase Location: 3562529-3562727 bp Feature: domain Description: GIIM Note: maturase Location: 3562529-3562727 bp Feature: gene Location: 3563053-3563541 bp Feature: domain Description: PHA02517 Location: 3563056-3563530 bp Feature: domain Description: PHA0251 7 Location: 3563056-3563530 bp Feature: gene Location: 3563439-3564737 bp Ori: QKY38789.1 Feature: domain Description: IS285 Location: 3563469-3564627 bp Feature: domain Description: IS285 Location: 3563469-3564627 bp Feature: gene Location: 3651550-3651882 bp Ori: QKY38863.1 Feature: domain Description: InsE Location: 3651556-3651691 bp Feature: domain Description: InsE Location: 3651 556-3651 691 bp Feature: gene Location: 3651953-3652392 bp Feature: domain Description: InsE Location: 3651956-3652295 bp Feature: domain Description: InsE Location: 3651 956-3652295 bp Feature: gene Location: 3652392-3653156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3652434-3652638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3652434-3652638 bp Feature: domain Description: GIIM Note: maturase Location: 3652713-3652932 bp Feature: domain Description: GIIM Note: maturase Location: 365271 3-3652932 bp Feature: gene Location: 3653246-3653719 bp Feature: domain Description: PHA02517 Location: 3653252-3653717 bp Feature: domain Description: PHA0251 7 Location: 3653252-365371 7 bp Feature: gene Location: 3653953-3654848 bp Feature: gene Location: 4034810-4035016 bp Ori: QKY39185.1 Feature: domain Description: AlpA Location: 4034837-4035011 bp Feature: domain Description: AlpA Location: 4034837-403501 1 bp Feature: gene Location: 4035147-4035832 bp Feature: domain Description: InsE Location: 4035159-4035423 bp Feature: domain Description: InsE Location: 40351 59-4035423 bp Feature: gene Location: 4036505-4038013 bp Ori: QKY39186.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036763-4037495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4036763-4037495 bp Feature: domain Description: GIIM Note: maturase Location: 4037570-4037768 bp Feature: domain Description: GIIM Note: maturase Location: 4037570-4037768 bp Feature: gene Location: 4038094-4038552 bp Feature: domain Description: PHA02517 Location: 4038097-4038544 bp Feature: domain Description: PHA0251 7 Location: 4038097-4038544 bp Feature: gene Location: 4038930-4039100 bp Ori: QKY39187.1 Feature: domain Description: HTH_XRE Location: 4038939-4039077 bp Feature: domain Description: HTH_XRE Location: 4038939-4039077 bp Feature: gene Location: 4044874-4045878 bp Ori: QKY39192.1 Feature: domain Description: fruct_sucro_rep Location: 4044895-4045873 bp Feature: domain Description: fruct_sucro_rep Location: 4044895-4045873 bp Feature: gene Location: 4046014-4046147 bp Feature: gene Location: 4046311-4047819 bp Ori: QKY39193.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4046569-4047301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4046569-4047301 bp Feature: domain Description: GIIM Note: maturase Location: 4047376-4047574 bp Feature: domain Description: GIIM Note: maturase Location: 4047376-4047574 bp Feature: gene Location: 4048492-4048916 bp Feature: gene Location: 4048981-4050132 bp Ori: QKY39194.1 Feature: domain Description: HTH_38 Location: 4048990-4049104 bp Feature: domain Description: HTH_38 Location: 4048990-40491 04 bp Feature: domain Description: Tra8 Location: 4049140-4050121 bp Feature: domain Description: Tra8 Location: 40491 40-40501 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), FimA (pfam16970), Fimbrial (pfam00419), InsE (COG2963), FimD (COG3188)
type_II_gspE (TIGR02533), LomR (COG3637), dmsA_ynfE (TIGR02166), PRK14849 (autotransporter barrel domain-containing lipoprotein), YbbK (COG1683), YbgA (COG3272), PRK15313 (intestinal colonization autotransporter adhesin MisL), IS285 (COG3328), AlpA (COG3311), HTH_XRE (smart00530)
fruct_sucro_rep (TIGR02417)

Seq: CP054225.1 Escherichia coli strain EcPF16 plasmid p1, complete sequence (123935 bp)
Overview 1 RT 1: 96467-100747 bp 2 RT 2: 118567-123608 bp Neighborhood of RT #1 [96467, 100761] PRK09409 InsE RVT-GII GIIM PHA02517 PinE Neighborhood of RT #2 [118567, 123610] PRK13705 InsE RVT-GII GIIM PHA02517 Feature: gene Location: 96467-96697 bp Feature: domain Description: PRK09409 Location: 96470-96695 bp Feature: domain Description: PRK09409 Location: 96470-96695 bp Feature: gene Location: 96757-97496 bp Feature: domain Description: InsE Location: 96760-97096 bp Feature: domain Description: InsE Location: 96760-97096 bp Feature: gene Location: 98169-99677 bp Ori: QKY40004.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98427-99159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9842 7-99159 bp Feature: domain Description: GIIM Note: maturase Location: 99234-99432 bp Feature: domain Description: GIIM Note: maturase Location: 992 34-99432 bp Feature: gene Location: 99767-100240 bp Feature: domain Description: PHA02517 Location: 99773-100238 bp Feature: domain Description: PHA02 517 Location: 99773-1002 38 bp Feature: gene Location: 100285-100761 bp Feature: domain Description: PinE Location: 100291-100747 bp Feature: domain Description: PinE Location: 1002 91-100747 bp Feature: gene Location: 118567-119733 bp Ori: QKY40020.1 Gene: sopA Feature: domain Description: PRK13705 Location: 118570-119731 bp Feature: domain Description: PRK13705 Location: 118570-119731 bp Feature: gene Location: 120130-120866 bp Feature: domain Description: InsE Location: 120142-120481 bp Feature: domain Description: InsE Location: 12 0142 -12 0481 bp Feature: gene Location: 121539-123047 bp Ori: QKY40018.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121797-122529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1797-12 2 52 9 bp Feature: domain Description: GIIM Note: maturase Location: 122604-122802 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 604-12 2 802 bp Feature: gene Location: 123137-123610 bp Feature: domain Description: PHA02517 Location: 123143-123608 bp Feature: domain Description: PHA02 517 Location: 12 3143-12 3608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PinE (COG1961), PRK13705 (plasmid-partitioning protein SopA; Provisional)