myRT

myRT report for GCA_013372405.1_ASM1337240v1

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Seq: CP054233.1 Escherichia coli strain EcPF7 plasmid p1, complete sequence (129632 bp)
Overview 1 RT 1: 12900-17057 bp 2 RT 2: 26701-29554 bp Neighborhood of RT #1 [12900, 17057] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [26701, 29746] InsE RVT-GII IS5 PRK10173 Feature: gene Location: 12900-13304 bp Ori: QKY53698.1 Feature: domain Description: InsE Location: 12930-13266 bp Feature: domain Description: InsE Location: 1 2930-1 3266 bp Feature: gene Location: 13333-13716 bp Feature: domain Description: PHA02517 Location: 13339-13672 bp Feature: domain Description: PHA0251 7 Location: 1 3339-1 3672 bp Feature: gene Location: 13806-15314 bp Ori: QKY53808.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4064-1 4796 bp Feature: domain Description: GIIM Note: maturase Location: 14871-15069 bp Feature: domain Description: GIIM Note: maturase Location: 1 4871 -1 5069 bp Feature: gene Location: 15987-16726 bp Feature: domain Description: InsE Location: 15990-16326 bp Feature: domain Description: InsE Location: 1 5990-1 6326 bp Feature: gene Location: 16752-17057 bp Feature: gene Location: 26701-26961 bp Feature: gene Location: 27063-27802 bp Feature: domain Description: InsE Location: 27066-27402 bp Feature: domain Description: InsE Location: 27066-27402 bp Feature: gene Location: 28475-28789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28733-28790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28733-28790 bp Feature: gene Location: 28790-28963 bp Feature: domain Description: IS5 Location: 28799-28949 bp Feature: domain Description: IS5 Location: 28799-28949 bp Feature: gene Location: 29113-29746 bp Feature: domain Description: PRK10173 Location: 29116-29554 bp Feature: domain Description: PRK1 01 73 Location: 291 1 6-29554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), IS5 (COG3039), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: CP054232.1 Escherichia coli strain EcPF7 chromosome, complete genome (4996527 bp)
Overview 1 RT 1: 3245420-3251811 bp 2 RT 2: 4877712-4884566 bp Neighborhood of RT #1 [3245420, 3251837] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #2 [4877712, 4884566] PRK11388 RVT-Retrons Feature: gene Location: 3245420-3246475 bp Ori: QKY51933.1 Feature: domain Description: YesN Location: 3245423-3245813 bp Feature: domain Description: YesN Location: 32 4542 3-32 45813 bp Feature: domain Description: YesN Location: 3246155-3246452 bp Feature: domain Description: YesN Location: 32 46155-32 46452 bp Feature: gene Location: 3246492-3247721 bp Ori: QKY51934.1 Feature: domain Description: YesM Location: 3246972-3247713 bp Feature: domain Description: YesM Location: 32 46972 -32 47713 bp Feature: gene Location: 3248304-3248825 bp Ori: QKY51935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3248310-3248592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 48310-32 48592 bp Feature: domain Description: GIIM Note: maturase Location: 3248640-3248820 bp Feature: domain Description: GIIM Note: maturase Location: 32 48640-32 4882 0 bp Feature: gene Location: 3248853-3249392 bp Ori: QKY51936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3249183-3249261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 49183-32 492 61 bp Feature: gene Location: 3249878-3250783 bp Feature: gene Location: 3250920-3251837 bp Ori: QKY51938.1 Feature: domain Description: PFLE_PFLC Location: 3250956-3251811 bp Feature: domain Description: PFLE_PFLC Location: 32 50956-32 51811 bp Feature: gene Location: 4877712-4879631 bp Ori: QKY53364.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 4877715-4879623 bp Feature: domain Description: PRK11388 Location: 4877715-487962 3 bp Feature: gene Location: 4879668-4879844 bp Feature: gene Location: 4880923-4882680 bp Ori: QKY53366.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4881067-4881685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4881067-4881685 bp Feature: gene Location: 4882927-4884054 bp Feature: gene Location: 4884051-4884566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons