myRT

myRT report for GCA_013374235.1_ASM1337423v1

Download annotations/find similar RTs

Seq: AP023219.1 Escherichia coli M505 DNA, complete genome (4844517 bp)
Overview 1 RT 1: 105791-108850 bp 2 RT 2: 1849909-1853611 bp 3 RT 3: 2348279-2354746 bp 4 RT 4: 4579682-4583066 bp Neighborhood of RT #1 [105791, 108858] PHA02517 RVT-GII RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1849909, 1853721] InsE PHA02517 RVT-GII GIIM PHA02517 Ogr_Delta Neighborhood of RT #3 [2348279, 2354746] PinE RVT-GII Neighborhood of RT #4 [4579682, 4583066] HTH_Tnp_1 Tra5 RVT-Retrons PLN03194 PRK10597 Feature: gene Location: 105791-105919 bp Feature: gene Location: 105769-106248 bp Feature: domain Description: PHA02517 Location: 105829-106183 bp Feature: domain Description: PHA0251 7 Location: 1 05829-1 061 83 bp Feature: gene Location: 106841-107236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107114-107189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 1 4-1 071 89 bp Feature: gene Location: 107278-107919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107284-107797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07284-1 07797 bp Feature: gene Location: 107933-108319 bp Feature: domain Description: GIIM Note: maturase Location: 107939-108095 bp Feature: domain Description: GIIM Note: maturase Location: 1 07939-1 08095 bp Feature: gene Location: 108442-108858 bp Feature: domain Description: PHA02517 Location: 108445-108850 bp Feature: domain Description: PHA0251 7 Location: 1 08445-1 08850 bp Feature: gene Location: 1849909-1850211 bp Feature: domain Description: InsE Location: 1849918-1850200 bp Feature: domain Description: InsE Location: 1 84991 8-1 850200 bp Feature: gene Location: 1850238-1850663 bp Feature: domain Description: PHA02517 Location: 1850262-1850598 bp Feature: domain Description: PHA0251 7 Location: 1 850262-1 850598 bp Feature: gene Location: 1851255-1852778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1851528-1852260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 851 528-1 852260 bp Feature: domain Description: GIIM Note: maturase Location: 1852335-1852533 bp Feature: domain Description: GIIM Note: maturase Location: 1 852335-1 852533 bp Feature: gene Location: 1852943-1853347 bp Feature: domain Description: PHA02517 Location: 1852946-1853336 bp Feature: domain Description: PHA0251 7 Location: 1 852946-1 853336 bp Feature: gene Location: 1853461-1853721 bp Feature: domain Description: Ogr_Delta Location: 1853470-1853611 bp Feature: domain Description: Ogr_Delta Location: 1 853470-1 85361 1 bp Feature: gene Location: 2348279-2348497 bp Feature: domain Description: PinE Location: 2348282-2348489 bp Feature: domain Description: PinE Location: 2348282-2348489 bp Feature: gene Location: 2348532-2348903 bp Feature: gene Location: 2348789-2350276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2349194-2349884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23491 94-2349884 bp Feature: gene Location: 2350327-2350560 bp Feature: gene Location: 2350709-2354746 bp Feature: gene Location: 4579682-4579945 bp Feature: domain Description: HTH_Tnp_1 Location: 4579688-4579892 bp Feature: domain Description: HTH_Tnp_1 Location: 4579688-4579892 bp Feature: gene Location: 4579972-4580802 bp Feature: domain Description: Tra5 Location: 4579996-4580761 bp Feature: domain Description: Tra5 Location: 4579996-4580761 bp Feature: gene Location: 4580812-4582143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4581103-4581694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4581 1 03-4581 694 bp Feature: domain Description: PLN03194 Location: 4581994-4582117 bp Feature: domain Description: PLN031 94 Location: 4581 994-45821 1 7 bp Feature: gene Location: 4582501-4582761 bp Feature: domain Description: PRK10597 Location: 4582504-4582744 bp Feature: domain Description: PRK1 0597 Location: 4582504-4582744 bp Feature: gene Location: 4582884-4583066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Ogr_Delta (pfam04606), PinE (COG1961), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), RVT-Retrons, PLN03194 (putative disease resistance protein; Provisional)
PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: AP023220.1 Escherichia coli M505 plasmid pM505-NDM5 DNA, complete genome (97234 bp)
Overview 1 RT 1: 12929-17127 bp Neighborhood of RT #1 [12929, 17129] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 12929-13186 bp Feature: gene Location: 13217-13492 bp Feature: gene Location: 14066-15733 bp Feature: domain Description: RVT_N Location: 14114-14351 bp Feature: domain Description: RVT_N Location: 14114-14351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14402-15044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14402 -15044 bp Feature: domain Description: GIIM Note: maturase Location: 15095-15329 bp Feature: domain Description: GIIM Note: maturase Location: 15095-1532 9 bp Feature: domain Description: HNHc Note: nucleases Location: 15539-15698 bp Feature: domain Description: HNHc Note: nucleases Location: 15539-15698 bp Feature: gene Location: 16235-16657 bp Feature: domain Description: DUF1380 Location: 16238-16535 bp Feature: domain Description: DUF1380 Location: 162 38-16535 bp Feature: gene Location: 16704-17129 bp Feature: domain Description: Antirestrict Location: 16839-17127 bp Feature: domain Description: Antirestrict Location: 16839-1712 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: AP023221.1 Escherichia coli M505 plasmid pM505-a DNA, complete genome (130968 bp)
Overview 1 RT 1: 96423-99090 bp Neighborhood of RT #1 [96423, 99090] ParE_toxin RVT-GII GIIM RVT-GII Feature: gene Location: 96423-96590 bp Feature: gene Location: 96716-96919 bp Feature: domain Description: ParE_toxin Location: 96731-96914 bp Feature: domain Description: ParE_toxin Location: 9673 1-96914 bp Feature: gene Location: 97170-97823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97173-97380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97173 -973 80 bp Feature: domain Description: GIIM Note: maturase Location: 97497-97665 bp Feature: domain Description: GIIM Note: maturase Location: 97497-97665 bp Feature: gene Location: 97877-98584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98162-98510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98162-98510 bp Feature: gene Location: 98595-98867 bp Feature: gene Location: 98917-99090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-GII, GIIM (pfam08388)