myRT

myRT report for GCA_013374275.1_ASM1337427v1

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Seq: AP023226.1 Escherichia coli YJ3 DNA, complete genome (4823608 bp)
Overview 1 RT 1: 874243-878534 bp 2 RT 2: 1976787-1980205 bp 3 RT 3: 3707977-3711959 bp 4 RT 4: 4195995-4198981 bp 5 RT 5: 4466626-4472727 bp Neighborhood of RT #1 [874243, 878534] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [1976787, 1980270] Ogr_Delta PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3707977, 3711985] Asparaginase_2 RVT-GII DcuC Neighborhood of RT #4 [4195995, 4198981] RVT-GII GIIM RVT-GII Neighborhood of RT #5 [4466626, 4472735] SLATT_5 RVT-UG17 phage_tail_N 7tmA_amine_R-like Peptidase_S74 APC_N_CC Feature: gene Location: 874243-875505 bp Feature: domain Description: YesM Location: 874756-875497 bp Feature: domain Description: YesM Location: 874756-875497 bp Feature: gene Location: 875535-875705 bp Feature: gene Location: 876055-876576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876061-876343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876061 -876343 bp Feature: domain Description: GIIM Note: maturase Location: 876391-876571 bp Feature: domain Description: GIIM Note: maturase Location: 876391 -876571 bp Feature: gene Location: 876604-877143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876934-877012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876934-87701 2 bp Feature: gene Location: 877174-877371 bp Feature: gene Location: 877629-878534 bp Feature: gene Location: 1976787-1977047 bp Feature: domain Description: Ogr_Delta Location: 1976796-1976937 bp Feature: domain Description: Ogr_Delta Location: 1 976796-1 976937 bp Feature: gene Location: 1977161-1977565 bp Feature: domain Description: PHA02517 Location: 1977164-1977554 bp Feature: domain Description: PHA0251 7 Location: 1 9771 64-1 977554 bp Feature: gene Location: 1977730-1979253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1978003-1978735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 978003-1 978735 bp Feature: domain Description: GIIM Note: maturase Location: 1978810-1979008 bp Feature: domain Description: GIIM Note: maturase Location: 1 97881 0-1 979008 bp Feature: gene Location: 1979207-1979632 bp Feature: gene Location: 1979845-1980270 bp Feature: domain Description: PHA02517 Location: 1979869-1980205 bp Feature: domain Description: PHA0251 7 Location: 1 979869-1 980205 bp Feature: gene Location: 3707977-3709008 bp Feature: domain Description: Asparaginase_2 Location: 3708067-3709000 bp Feature: domain Description: Asparaginase_2 Location: 3708067-3709000 bp Feature: gene Location: 3709335-3709484 bp Feature: gene Location: 3709532-3709978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709838-3709940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709838-3709940 bp Feature: gene Location: 3710200-3710571 bp Feature: gene Location: 3710624-3711985 bp Feature: domain Description: DcuC Location: 3710627-3711959 bp Feature: domain Description: DcuC Location: 371 0627-371 1 959 bp Feature: gene Location: 4195995-4196180 bp Feature: gene Location: 4196353-4196523 bp Feature: gene Location: 4196686-4197339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4196689-4197097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 96689-41 97097 bp Feature: domain Description: GIIM Note: maturase Location: 4197145-4197337 bp Feature: domain Description: GIIM Note: maturase Location: 41 971 45-41 97337 bp Feature: gene Location: 4197312-4197746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4197504-4197720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 97504-41 97720 bp Feature: gene Location: 4197915-4198112 bp Feature: gene Location: 4198655-4198981 bp Feature: gene Location: 4466626-4466766 bp Feature: gene Location: 4466779-4467330 bp Feature: domain Description: SLATT_5 Location: 4466785-4467301 bp Feature: domain Description: SLATT_5 Location: 4466785-4467301 bp Feature: gene Location: 4467308-4468678 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4467536-4468142 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4467536-44681 42 bp Feature: gene Location: 4468759-4468935 bp Feature: gene Location: 4468974-4472735 bp Feature: domain Description: phage_tail_N Location: 4468977-4469376 bp Feature: domain Description: phage_tail_N Location: 4468977-4469376 bp Feature: domain Description: 7tmA_amine_R-like Location: 4469787-4471779 bp Feature: domain Description: 7tmA_amine_R-like Location: 4469787-4471 779 bp Feature: domain Description: Peptidase_S74 Location: 4472304-4472451 bp Feature: domain Description: Peptidase_S74 Location: 4472304-4472451 bp Feature: domain Description: APC_N_CC Location: 4472604-4472727 bp Feature: domain Description: APC_N_CC Location: 4472604-4472727 bp Sorry, your browser does not support 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Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), Ogr_Delta (pfam04606), PHA02517 (putative transposase OrfB; Reviewed), Asparaginase_2 (pfam01112), DcuC (TIGR00771), SLATT_5 (pfam18160), RVT-UG17, phage_tail_N (pfam08400)
7tmA_amine_R-like (cd14967), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689)

Seq: AP023228.1 Escherichia coli YJ3 plasmid pYJ3-a DNA, complete genome (170909 bp)
Overview 1 RT 1: 76973-81109 bp Neighborhood of RT #1 [76973, 81109] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 76973-77206 bp Feature: domain Description: DUF905 Location: 77003-77201 bp Feature: domain Description: DUF905 Location: 77003-772 01 bp Feature: gene Location: 77274-77726 bp Feature: domain Description: PRK13732 Location: 77280-77724 bp Feature: domain Description: PRK13732 Location: 772 80-7772 4 bp Feature: gene Location: 77921-79822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78188-79019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78188-79019 bp Feature: domain Description: Intron_maturas2 Location: 79133-79391 bp Feature: domain Description: Intron_maturas2 Location: 79133-79391 bp Feature: domain Description: HNHc Note: nucleases Location: 79565-79727 bp Feature: domain Description: HNHc Note: nucleases Location: 79565-7972 7 bp Feature: gene Location: 80564-80767 bp Feature: gene Location: 80819-81109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)