myRT

myRT report for GCA_013374295.1_ASM1337429v1

Download annotations/find similar RTs

Seq: AP023230.1 Escherichia coli YJ4 DNA, complete genome (4824273 bp)
Overview 1 RT 1: 1088155-1091179 bp 2 RT 2: 1438957-1443326 bp 3 RT 3: 3667354-3673813 bp 4 RT 4: 4167605-4171023 bp Neighborhood of RT #1 [1088155, 1091244] PHA02517 GIIM RVT-GII RVT-GII PHA02517 Neighborhood of RT #2 [1438957, 1443379] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 PRK10597 RVT-Retrons PLN03194 Tra5 HTH_Tnp_1 Neighborhood of RT #3 [3667354, 3673821] RVT-GII PinE Neighborhood of RT #4 [4167605, 4171088] Ogr_Delta PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1088155-1088571 bp Feature: domain Description: PHA02517 Location: 1088158-1088563 bp Feature: domain Description: PHA0251 7 Location: 1 0881 58-1 088563 bp Feature: gene Location: 1088694-1089080 bp Feature: domain Description: GIIM Note: maturase Location: 1088700-1088856 bp Feature: domain Description: GIIM Note: maturase Location: 1 088700-1 088856 bp Feature: gene Location: 1089094-1089735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089100-1089613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0891 00-1 08961 3 bp Feature: gene Location: 1089777-1090172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090050-1090125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 090050-1 0901 25 bp Feature: gene Location: 1090267-1090473 bp Feature: gene Location: 1090765-1091244 bp Feature: domain Description: PHA02517 Location: 1090825-1091179 bp Feature: domain Description: PHA0251 7 Location: 1 090825-1 091 1 79 bp Feature: gene Location: 1438957-1440177 bp Feature: domain Description: zf-ISL3 Location: 1439089-1439215 bp Feature: domain Description: zf-ISL3 Location: 1 439089-1 43921 5 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1439233-1439380 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 439233-1 439380 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1439431-1440136 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 439431 -1 4401 36 bp Feature: gene Location: 1440300-1440560 bp Feature: domain Description: PRK10597 Location: 1440303-1440543 bp Feature: domain Description: PRK1 0597 Location: 1 440303-1 440543 bp Feature: gene Location: 1440918-1442249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1441209-1441800 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 441 209-1 441 800 bp Feature: domain Description: PLN03194 Location: 1442100-1442223 bp Feature: domain Description: PLN031 94 Location: 1 4421 00-1 442223 bp Feature: gene Location: 1442259-1443089 bp Feature: domain Description: Tra5 Location: 1442283-1443048 bp Feature: domain Description: Tra5 Location: 1 442283-1 443048 bp Feature: gene Location: 1443116-1443379 bp Feature: domain Description: HTH_Tnp_1 Location: 1443122-1443326 bp Feature: domain Description: HTH_Tnp_1 Location: 1 4431 22-1 443326 bp Feature: gene Location: 3667354-3671391 bp Feature: gene Location: 3671540-3671773 bp Feature: gene Location: 3671824-3673311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672229-3672919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3672229-367291 9 bp Feature: gene Location: 3673197-3673568 bp Feature: gene Location: 3673603-3673821 bp Feature: domain Description: PinE Location: 3673606-3673813 bp Feature: domain Description: PinE Location: 3673606-367381 3 bp Feature: gene Location: 4167605-4167865 bp Feature: domain Description: Ogr_Delta Location: 4167614-4167755 bp Feature: domain Description: Ogr_Delta Location: 41 6761 4-41 67755 bp Feature: gene Location: 4167979-4168383 bp Feature: domain Description: PHA02517 Location: 4167982-4168372 bp Feature: domain Description: PHA0251 7 Location: 41 67982-41 68372 bp Feature: gene Location: 4168548-4170071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168821-4169553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 68821 -41 69553 bp Feature: domain Description: GIIM Note: maturase Location: 4169628-4169826 bp Feature: domain Description: GIIM Note: maturase Location: 41 69628-41 69826 bp Feature: gene Location: 4170025-4170450 bp Feature: gene Location: 4170663-4171088 bp Feature: domain Description: PHA02517 Location: 4170687-4171023 bp Feature: domain Description: PHA0251 7 Location: 41 70687-41 71 023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, PLN03194 (putative disease resistance protein; Provisional), Tra5 (COG2801)
HTH_Tnp_1 (pfam01527), PinE (COG1961), Ogr_Delta (pfam04606)

Seq: AP023231.1 Escherichia coli YJ4 plasmid pYJ4-NDM5 DNA, complete genome (83461 bp)
Overview 1 RT 1: 71015-74927 bp Neighborhood of RT #1 [71015, 74927] Antirestrict DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 71015-71440 bp Feature: domain Description: Antirestrict Location: 71150-71438 bp Feature: domain Description: Antirestrict Location: 71150-71438 bp Feature: gene Location: 71487-71909 bp Feature: domain Description: DUF1380 Location: 71490-71787 bp Feature: domain Description: DUF1380 Location: 71490-71787 bp Feature: gene Location: 72411-74078 bp Feature: domain Description: RVT_N Location: 72459-72696 bp Feature: domain Description: RVT_N Location: 72 459-72 696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72747-73389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 747-73389 bp Feature: domain Description: GIIM Note: maturase Location: 73440-73674 bp Feature: domain Description: GIIM Note: maturase Location: 73440-73674 bp Feature: domain Description: HNHc Note: nucleases Location: 73884-74043 bp Feature: domain Description: HNHc Note: nucleases Location: 73884-74043 bp Feature: gene Location: 74358-74540 bp Feature: gene Location: 74652-74927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AP023232.1 Escherichia coli YJ4 plasmid pYJ4-a DNA, complete genome (130952 bp)
Overview 1 RT 1: 70787-74425 bp Neighborhood of RT #1 [70787, 74425] PRK15442 RVT-GII RVT-GII GIIM ParE_toxin Feature: gene Location: 70787-71647 bp Feature: domain Description: PRK15442 Location: 70796-71645 bp Feature: domain Description: PRK15442 Location: 70796-71645 bp Feature: gene Location: 71981-72253 bp Feature: gene Location: 72264-72971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72549-72897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72549-72897 bp Feature: gene Location: 73025-73678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73028-73235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 028-73 23 5 bp Feature: domain Description: GIIM Note: maturase Location: 73352-73520 bp Feature: domain Description: GIIM Note: maturase Location: 73 3 52-73 520 bp Feature: gene Location: 73929-74132 bp Feature: domain Description: ParE_toxin Location: 73944-74127 bp Feature: domain Description: ParE_toxin Location: 73 944-74127 bp Feature: gene Location: 74258-74425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15442 (beta-lactamase TEM; Provisional), RVT-GII, GIIM (pfam08388), ParE_toxin (pfam05016)