myRT

myRT report for GCA_013374795.1_ASM1337479v1

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Seq: CP055284.1 Acinetobacter sp. NEB 394 plasmid pBspH2, complete sequence (161809 bp)
Overview 1 RT 1: 38901-42785 bp 2 RT 2: 157803-161982 bp Neighborhood of RT #1 [38901, 43689] PRK10039 PHA02517 RVT-GII GIIM InsE InsE Neighborhood of RT #2 [157803, 162524] PRK10276 PRK10276 InsE RVT-GII GIIM PHA02517 DDE_Tnp_1_5 Feature: gene Location: 38901-39272 bp Ori: QKY92228.1 Feature: domain Description: PRK10039 Location: 38940-39237 bp Feature: domain Description: PRK1 0039 Location: 38940-39237 bp Feature: gene Location: 39324-39809 bp Feature: domain Description: PHA02517 Location: 39327-39789 bp Feature: domain Description: PHA0251 7 Location: 39327-39789 bp Feature: gene Location: 39889-41130 bp Ori: QKY92229.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40087-40744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40087-40744 bp Feature: domain Description: GIIM Note: maturase Location: 40822-41053 bp Feature: domain Description: GIIM Note: maturase Location: 40822-41 053 bp Feature: gene Location: 41644-42377 bp Feature: domain Description: InsE Location: 41659-41953 bp Feature: domain Description: InsE Location: 41 659-41 953 bp Feature: gene Location: 42557-43689 bp Feature: domain Description: InsE Location: 42563-42785 bp Feature: domain Description: InsE Location: 42563-42785 bp Feature: gene Location: 157803-158429 bp Ori: QKY92319.1 Feature: domain Description: PRK10276 Location: 157974-158256 bp Feature: domain Description: PRK1 0276 Location: 1 57974-1 58256 bp Feature: domain Description: PRK10276 Location: 158310-158412 bp Feature: domain Description: PRK1 0276 Location: 1 5831 0-1 5841 2 bp Feature: gene Location: 158633-159381 bp Feature: domain Description: InsE Location: 158645-158942 bp Feature: domain Description: InsE Location: 1 58645-1 58942 bp Feature: gene Location: 159895-161136 bp Ori: QKY92320.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160093-160750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 60093-1 60750 bp Feature: domain Description: GIIM Note: maturase Location: 160828-161059 bp Feature: domain Description: GIIM Note: maturase Location: 1 60828-1 61 059 bp Feature: gene Location: 161216-161536 bp Feature: domain Description: PHA02517 Location: 161219-161534 bp Feature: domain Description: PHA0251 7 Location: 1 61 21 9-1 61 534 bp Feature: gene Location: 161592-162524 bp Ori: QKY92187.1 Feature: domain Description: DDE_Tnp_1_5 Location: 161661-161982 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 61 661 -1 61 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10039 (hypothetical protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DDE_Tnp_1_5 (pfam13737)

Seq: CP055277.1 Acinetobacter sp. NEB 394 chromosome, complete genome (3479933 bp)
Overview 1 RT 1: 808337-812457 bp 2 RT 2: 1130468-1135571 bp 3 RT 3: 1305033-1309002 bp 4 RT 4: 2644989-2649107 bp Neighborhood of RT #1 [808337, 812457] thym_sym thym_sym CHAP RVT-GII GIIM Neighborhood of RT #2 [1130468, 1135588] HTH_1 PBP2_BudR InsE RVT-GII GIIM PHA02517 RarD Neighborhood of RT #3 [1305033, 1309034] YcjD RVT-Retrons InsA InsB Neighborhood of RT #4 [2644989, 2649107] Serine_protease DUF3892 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 808337-809179 bp Ori: QKY89732.1 Gene: thyA Feature: domain Description: thym_sym Location: 808346-808592 bp Feature: domain Description: thym_sym Location: 808346-808592 bp Feature: domain Description: thym_sym Location: 808595-809177 bp Feature: domain Description: thym_sym Location: 808595-809177 bp Feature: gene Location: 809706-810173 bp Ori: QKY89733.1 Feature: domain Description: CHAP Location: 809922-810120 bp Feature: domain Description: CHAP Location: 80992 2 -81012 0 bp Feature: gene Location: 810666-811907 bp Ori: QKY89734.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810864-811521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810864-81152 1 bp Feature: domain Description: GIIM Note: maturase Location: 811599-811830 bp Feature: domain Description: GIIM Note: maturase Location: 811599-811830 bp Feature: gene Location: 811984-812049 bp Feature: gene Location: 812089-812457 bp Feature: gene Location: 1130468-1131379 bp Ori: QKY89996.1 Feature: domain Description: HTH_1 Location: 1130477-1130654 bp Feature: domain Description: HTH_1 Location: 1130477-1130654 bp Feature: domain Description: PBP2_BudR Location: 1130744-1131332 bp Feature: domain Description: PBP2 _BudR Location: 1130744-1131332 bp Feature: gene Location: 1131480-1132213 bp Feature: domain Description: InsE Location: 1131495-1131789 bp Feature: domain Description: InsE Location: 1131495-1131789 bp Feature: gene Location: 1132727-1133968 bp Ori: QKY89997.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132925-1133582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1132 92 5-1133582 bp Feature: domain Description: GIIM Note: maturase Location: 1133660-1133891 bp Feature: domain Description: GIIM Note: maturase Location: 1133660-1133891 bp Feature: gene Location: 1134048-1134533 bp Feature: domain Description: PHA02517 Location: 1134051-1134513 bp Feature: domain Description: PHA02 517 Location: 1134051-1134513 bp Feature: gene Location: 1134683-1135588 bp Ori: QKY89998.1 Gene: rarD Feature: domain Description: RarD Location: 1134701-1135571 bp Feature: domain Description: RarD Location: 1134701-1135571 bp Feature: gene Location: 1305033-1305491 bp Feature: gene Location: 1305777-1305944 bp Feature: domain Description: YcjD Location: 1305780-1305945 bp Feature: domain Description: YcjD Location: 1305780-1305945 bp Feature: gene Location: 1306251-1307198 bp Ori: QKY90145.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1306365-1306953 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1306365-1306953 bp Feature: gene Location: 1307195-1307812 bp Feature: gene Location: 1308333-1309034 bp Ori: QKY90147.1 Feature: domain Description: InsA Location: 1308348-1308615 bp Feature: domain Description: InsA Location: 1308348-1308615 bp Feature: domain Description: InsB Location: 1308645-1309002 bp Feature: domain Description: InsB Location: 1308645-1309002 bp Feature: gene Location: 2644989-2645540 bp Ori: QKY91271.1 Feature: domain Description: Serine_protease Location: 2645058-2645229 bp Feature: domain Description: Serine_protease Location: 2 645058-2 6452 2 9 bp Feature: domain Description: DUF3892 Location: 2645310-2645520 bp Feature: domain Description: DUF3892 Location: 2 645310-2 64552 0 bp Feature: gene Location: 2645731-2646216 bp Feature: domain Description: PHA02517 Location: 2645734-2646196 bp Feature: domain Description: PHA02 517 Location: 2 645734-2 646196 bp Feature: gene Location: 2646296-2647537 bp Ori: QKY91272.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646494-2647151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 646494-2 647151 bp Feature: domain Description: GIIM Note: maturase Location: 2647229-2647460 bp Feature: domain Description: GIIM Note: maturase Location: 2 6472 2 9-2 647460 bp Feature: gene Location: 2648051-2648784 bp Feature: domain Description: InsE Location: 2648066-2648360 bp Feature: domain Description: InsE Location: 2 648066-2 648360 bp Feature: gene Location: 2648832-2649107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thym_sym (TIGR03284), CHAP (pfam05257), RVT-GII, GIIM (pfam08388), HTH_1 (pfam00126), PBP2_BudR (cd08451), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RarD (COG2962), YcjD (COG2852)
RVT-Retrons, InsA (COG3677), InsB (COG1662), Serine_protease (pfam18405), DUF3892 (pfam13031)