myRT

myRT report for GCA_013374975.1_ASM1337497v1

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Seq: CP056025.1 Klebsiella pneumoniae strain 39428 plasmid pKPN39428.1, complete sequence (211775 bp)
Overview 1 RT 1: 200939-205930 bp Neighborhood of RT #1 [200939, 205935] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 200939-201364 bp Ori: QKY96975.1 Feature: domain Description: Antirestrict Location: 201074-201362 bp Feature: domain Description: Antirestrict Location: 201 074-201 362 bp Feature: gene Location: 201885-202115 bp Feature: gene Location: 202349-203836 bp Ori: QKY96977.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202754-203444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202754-203444 bp Feature: gene Location: 204239-204664 bp Ori: QKY96978.1 Gene: umuD Feature: domain Description: PRK10276 Location: 204242-204650 bp Feature: domain Description: PRK1 0276 Location: 204242-204650 bp Feature: gene Location: 204664-205935 bp Ori: QKY96979.1 Feature: domain Description: umuC Location: 204667-205930 bp Feature: domain Description: umuC Location: 204667-205930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP056029.1 Klebsiella pneumoniae strain 39428 chromosome, complete genome (5335724 bp)
Overview 1 RT 1: 1770520-1776991 bp 2 RT 2: 3132634-3137998 bp 3 RT 3: 3518938-3524492 bp 4 RT 4: 3963562-3966657 bp Neighborhood of RT #1 [1770520, 1777005] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [3132634, 3138051] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #3 [3518938, 3524512] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #4 [3963562, 3966713] PRK10276 PRK10276 RVT-GII Laminin_G_3 Feature: gene Location: 1770520-1771944 bp Ori: QKY98784.1 Gene: sbcB Feature: domain Description: SbcB Location: 1770526-1771942 bp Feature: domain Description: SbcB Location: 177052 6-1771942 bp Feature: gene Location: 1772125-1773288 bp Ori: QKY98785.1 Gene: dacD Feature: domain Description: dacD Location: 1772128-1773283 bp Feature: domain Description: dacD Location: 1772 12 8-17732 83 bp Feature: gene Location: 1773806-1775293 bp Ori: QKY98786.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1774211-1774901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17742 11-1774901 bp Feature: gene Location: 1775375-1775848 bp Ori: QKY98787.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1775378-1775837 bp Feature: domain Description: PRK10016 Location: 1775378-1775837 bp Feature: gene Location: 1775947-1777005 bp Ori: QKY98788.1 Feature: domain Description: YccC Location: 1775953-1776991 bp Feature: domain Description: YccC Location: 1775953-1776991 bp Feature: gene Location: 3132634-3133899 bp Ori: QKZ00053.1 Feature: domain Description: umuC Location: 3132637-3133897 bp Feature: domain Description: umuC Location: 3132 637-3133897 bp Feature: gene Location: 3133902-3134321 bp Ori: QKZ00054.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3133905-3134316 bp Feature: domain Description: PRK102 76 Location: 3133905-3134316 bp Feature: gene Location: 3134400-3135887 bp Ori: QKZ00055.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134805-3135495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134805-3135495 bp Feature: gene Location: 3136502-3136744 bp Ori: QKZ00056.1 Feature: domain Description: DinI Location: 3136553-3136733 bp Feature: domain Description: DinI Location: 3136553-3136733 bp Feature: gene Location: 3136915-3138051 bp Ori: QKZ02158.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3137095-3137998 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3137095-3137998 bp Feature: gene Location: 3518938-3519816 bp Ori: QKZ02183.1 Feature: domain Description: Phage_CI_repr Location: 3518965-3519148 bp Feature: domain Description: Phage_CI_repr Location: 3518965-3519148 bp Feature: domain Description: Phage_CI_repr Location: 3519277-3519469 bp Feature: domain Description: Phage_CI_repr Location: 35192 77-3519469 bp Feature: domain Description: Phage_CI_C Location: 3519496-3519790 bp Feature: domain Description: Phage_CI_C Location: 3519496-3519790 bp Feature: gene Location: 3519828-3520772 bp Feature: gene Location: 3520871-3522358 bp Ori: QKZ00411.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521276-3521966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 12 76-352 1966 bp Feature: gene Location: 3522846-3523826 bp Ori: QKZ02184.1 Feature: domain Description: int Location: 3522849-3523776 bp Feature: domain Description: int Location: 352 2 849-352 3776 bp Feature: gene Location: 3523949-3524512 bp Ori: QKZ00412.1 Feature: domain Description: YbjK Location: 3523955-3524492 bp Feature: domain Description: YbjK Location: 352 3955-352 4492 bp Feature: gene Location: 3963562-3963879 bp Ori: QKZ00787.1 Feature: domain Description: PRK10276 Location: 3963568-3963682 bp Feature: domain Description: PRK102 76 Location: 3963568-3963682 bp Feature: domain Description: PRK10276 Location: 3963709-3963778 bp Feature: domain Description: PRK102 76 Location: 3963709-3963778 bp Feature: gene Location: 3963879-3964118 bp Feature: gene Location: 3964196-3965683 bp Ori: QKZ00789.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964601-3965291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3964601-39652 91 bp Feature: gene Location: 3966133-3966342 bp Feature: gene Location: 3966339-3966713 bp Ori: QKZ02205.1 Feature: domain Description: Laminin_G_3 Location: 3966360-3966657 bp Feature: domain Description: Laminin_G_3 Location: 3966360-3966657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022)
Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), Laminin_G_3 (pfam13385)