myRT

myRT report for GCA_013375735.1_ASM1337573v1

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Seq: CP056085.1 Ralstonia solanacearum strain FJAT91-F8 chromosome, complete genome (3873088 bp)
Overview 1 RT 1: 2515287-2520176 bp Neighborhood of RT #1 [2515287, 2520176] arc_metj PRK13876 RVT-GII PRK13876 Feature: gene Location: 2515287-2515751 bp Ori: QKZ33253.1 Feature: domain Description: arc_metj Location: 2515302-2515410 bp Feature: domain Description: arc_metj Location: 251 5302-251 541 0 bp Feature: gene Location: 2515748-2516677 bp Feature: domain Description: PRK13876 Location: 2515751-2516675 bp Feature: domain Description: PRK1 3876 Location: 251 5751 -251 6675 bp Feature: gene Location: 2516697-2518229 bp Ori: QKZ33254.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2517108-2517798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 71 08-251 7798 bp Feature: gene Location: 2518595-2519671 bp Gene: traG Feature: domain Description: PRK13876 Location: 2518598-2519672 bp Feature: domain Description: PRK1 3876 Location: 251 8598-251 9672 bp Feature: gene Location: 2519895-2520176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), PRK13876 (conjugal transfer coupling protein TraG; Provisional), RVT-GII

Seq: CP056086.1 Ralstonia solanacearum strain FJAT91-F8 plasmid plas1, complete sequence (2000795 bp)
Overview 1 RT 1: 325729-332237 bp 2 RT 2: 517602-565166 bp 3 RT 3: 771465-781771 bp Neighborhood of RT #1 [325729, 332296] PolY_like COG4544 RVT-GII MFS_MucK AcrR Neighborhood of RT #2 [517602, 565195] RVT-GII PRK12467 PRK12467 PRK12316 PRK12467 PRK12467 PP-binding PRK12316 EntF EntF PRK12467 PP-binding PKS PKS_AT PRK12467 HemL seco_metab_LLM PRK12467 PRK12467 PP-binding Condensation A_NRPS_alphaAR PRK12467 COG4908 EntF PRK12467 PRK12467 Neighborhood of RT #3 [771465, 781771] Nterm_IS4 DDE_Tnp_1 MTES_1575 DUF3320 RVT-GII DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 Feature: gene Location: 325729-327300 bp Ori: QKZ34865.1 Feature: domain Description: PolY_like Location: 325744-326794 bp Feature: domain Description: PolY_like Location: 32 5744-32 6794 bp Feature: gene Location: 327233-328168 bp Ori: QKZ34866.1 Gene: imuA Feature: domain Description: COG4544 Location: 327362-327842 bp Feature: domain Description: COG4544 Location: 32 7362 -32 7842 bp Feature: gene Location: 328213-329745 bp Ori: QKZ34867.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328624-329314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 862 4-32 9314 bp Feature: gene Location: 330248-331504 bp Ori: QKZ34868.1 Feature: domain Description: MFS_MucK Location: 330341-331481 bp Feature: domain Description: MFS_MucK Location: 330341-331481 bp Feature: gene Location: 331721-332296 bp Ori: QKZ34869.1 Feature: domain Description: AcrR Location: 331733-332237 bp Feature: domain Description: AcrR Location: 331733-332 2 37 bp Feature: gene Location: 517602-517760 bp Feature: gene Location: 517795-518106 bp Feature: gene Location: 518244-519776 bp Ori: QKZ35010.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518655-519345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 518655-519345 bp Feature: gene Location: 520297-538154 bp Feature: domain Description: PRK12467 Location: 520513-521788 bp Feature: domain Description: PRK12 467 Location: 52 0513-52 1788 bp Feature: domain Description: PRK12467 Location: 521818-523600 bp Feature: domain Description: PRK12 467 Location: 52 1818-52 3600 bp Feature: domain Description: PRK12316 Location: 523744-526900 bp Feature: domain Description: PRK12 316 Location: 52 3744-52 6900 bp Feature: domain Description: PRK12467 Location: 526933-528520 bp Feature: domain Description: PRK12 467 Location: 52 6933-52 852 0 bp Feature: domain Description: PRK12467 Location: 528745-533005 bp Feature: domain Description: PRK12 467 Location: 52 8745-533005 bp Feature: domain Description: PP-binding Location: 533059-533248 bp Feature: domain Description: PP-binding Location: 533059-5332 48 bp Feature: domain Description: PRK12316 Location: 533272-536440 bp Feature: domain Description: PRK12 316 Location: 5332 72 -536440 bp Feature: domain Description: EntF Location: 536470-537283 bp Feature: domain Description: EntF Location: 536470-5372 83 bp Feature: domain Description: EntF Location: 537355-537517 bp Feature: domain Description: EntF Location: 537355-537517 bp Feature: gene Location: 538154-565195 bp Ori: QKZ35011.1 Feature: domain Description: PRK12467 Location: 538190-539684 bp Feature: domain Description: PRK12 467 Location: 538190-539684 bp Feature: domain Description: PP-binding Location: 540002-540197 bp Feature: domain Description: PP-binding Location: 540002 -540197 bp Feature: domain Description: PKS Location: 540281-541532 bp Feature: domain Description: PKS Location: 5402 81-541532 bp Feature: domain Description: PKS_AT Location: 541844-542696 bp Feature: domain Description: PKS_AT Location: 541844-542 696 bp Feature: domain Description: PRK12467 Location: 543005-543236 bp Feature: domain Description: PRK12 467 Location: 543005-5432 36 bp Feature: domain Description: HemL Location: 543740-544997 bp Feature: domain Description: HemL Location: 543740-544997 bp Feature: domain Description: seco_metab_LLM Location: 545192-546209 bp Feature: domain Description: seco_metab_LLM Location: 545192 -5462 09 bp Feature: domain Description: PRK12467 Location: 546245-547310 bp Feature: domain Description: PRK12 467 Location: 5462 45-547310 bp Feature: domain Description: PRK12467 Location: 547385-549122 bp Feature: domain Description: PRK12 467 Location: 547385-54912 2 bp Feature: domain Description: PP-binding Location: 549179-549368 bp Feature: domain Description: PP-binding Location: 549179-549368 bp Feature: domain Description: Condensation Location: 549422-550751 bp Feature: domain Description: Condensation Location: 54942 2 -550751 bp Feature: domain Description: A_NRPS_alphaAR Location: 550853-551099 bp Feature: domain Description: A_NRPS_alphaAR Location: 550853-551099 bp Feature: domain Description: PRK12467 Location: 551144-555560 bp Feature: domain Description: PRK12 467 Location: 551144-555560 bp Feature: domain Description: COG4908 Location: 555833-556199 bp Feature: domain Description: COG4908 Location: 555833-556199 bp Feature: domain Description: EntF Location: 556424-558362 bp Feature: domain Description: EntF Location: 55642 4-558362 bp Feature: domain Description: PRK12467 Location: 558464-560603 bp Feature: domain Description: PRK12 467 Location: 558464-560603 bp Feature: domain Description: PRK12467 Location: 560624-565166 bp Feature: domain Description: PRK12 467 Location: 56062 4-565166 bp Feature: gene Location: 771465-772793 bp Ori: QKZ35162.1 Feature: domain Description: Nterm_IS4 Location: 771513-771789 bp Feature: domain Description: Nterm_IS4 Location: 771513-771789 bp Feature: domain Description: DDE_Tnp_1 Location: 771852-772524 bp Feature: domain Description: DDE_Tnp_1 Location: 771852 -772 52 4 bp Feature: gene Location: 773166-774206 bp Feature: domain Description: MTES_1575 Location: 773226-773517 bp Feature: domain Description: MTES_1575 Location: 7732 2 6-773517 bp Feature: domain Description: DUF3320 Location: 773691-773832 bp Feature: domain Description: DUF332 0 Location: 773691-773832 bp Feature: gene Location: 774227-775759 bp Ori: QKZ35163.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774638-775328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 774638-77532 8 bp Feature: gene Location: 776127-780713 bp Feature: domain Description: DUF4011 Location: 776235-776820 bp Feature: domain Description: DUF4011 Location: 7762 35-77682 0 bp Feature: domain Description: DEXXQc_SF1 Location: 777159-777735 bp Feature: domain Description: DEXXQc_SF1 Location: 777159-777735 bp Feature: domain Description: DEXXQc_SF1 Location: 779343-780105 bp Feature: domain Description: DEXXQc_SF1 Location: 779343-780105 bp Feature: domain Description: KOG1803 Location: 780456-780624 bp Feature: domain Description: KOG1803 Location: 780456-78062 4 bp Feature: gene Location: 781550-781771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT-GII, MFS_MucK (cd17371), AcrR (COG1309), PRK12467 (peptide synthase; Provisional), PRK12316 (peptide synthase; Provisional), PP-binding (pfam00550), EntF (COG3319), PKS (cd00833)
PKS_AT (smart00827), HemL (COG0001), seco_metab_LLM (TIGR04020), Condensation (pfam00668), A_NRPS_alphaAR (cd17647), COG4908 (Uncharacterized protein, contains a NRPS condensation (elongation) domain ), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), MTES_1575 (pfam18741), DUF3320 (pfam11784)
DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase )