myRT

myRT report for GCA_013376535.1_ASM1337653v1

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Seq: CP051159.1 Klebsiella pneumoniae strain 19PDR22 chromosome, complete genome (5396045 bp)
Overview 1 RT 1: 1244922-1251929 bp 2 RT 2: 1268186-1274669 bp 3 RT 3: 1723581-1727019 bp 4 RT 4: 1886171-1891832 bp 5 RT 5: 2470998-2477277 bp 6 RT 6: 2564963-2569975 bp 7 RT 7: 5044623-5057903 bp Neighborhood of RT #1 [1244922, 1252459] DUF4917 AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #2 [1268186, 1274671] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #3 [1723581, 1727019] Terminase_2 RVT-GII Neighborhood of RT #4 [1886171, 1891909] DinI RVT-GII Phage_GPA dam Neighborhood of RT #5 [2470998, 2477285] cas7_csf2 RVT-GII PRK10276 umuC Neighborhood of RT #6 [2564963, 2569975] HTH_28 rve RVT-GII Neighborhood of RT #7 [5044623, 5057908] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C dam Phage_GPA RVT-GII DinI Feature: gene Location: 1244922-1245941 bp Ori: QLA27169.1 Feature: domain Description: DUF4917 Location: 1244982-1245906 bp Feature: domain Description: DUF491 7 Location: 1 244982-1 245906 bp Feature: gene Location: 1247336-1249582 bp Ori: QLA27170.1 Feature: domain Description: AAA_15 Location: 1247339-1248347 bp Feature: domain Description: AAA_1 5 Location: 1 247339-1 248347 bp Feature: gene Location: 1249697-1250797 bp Ori: QLA27171.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1249880-1250408 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 249880-1 250408 bp Feature: gene Location: 1251128-1251202 bp Feature: gene Location: 1251356-1252459 bp Ori: QLA27172.1 Feature: domain Description: STKc_PknB_like Location: 1251488-1251929 bp Feature: domain Description: STKc_PknB_like Location: 1 251 488-1 251 929 bp Feature: gene Location: 1268186-1269244 bp Ori: QLA27189.1 Feature: domain Description: YccC Location: 1268192-1269230 bp Feature: domain Description: YccC Location: 1 2681 92-1 269230 bp Feature: gene Location: 1269343-1269816 bp Ori: QLA27190.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1269346-1269805 bp Feature: domain Description: PRK1 001 6 Location: 1 269346-1 269805 bp Feature: gene Location: 1269898-1271385 bp Ori: QLA27191.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270303-1270993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 270303-1 270993 bp Feature: gene Location: 1271903-1273066 bp Ori: QLA27192.1 Gene: dacD Feature: domain Description: dacD Location: 1271906-1273061 bp Feature: domain Description: dacD Location: 1 271 906-1 273061 bp Feature: gene Location: 1273247-1274671 bp Ori: QLA27193.1 Gene: sbcB Feature: domain Description: SbcB Location: 1273253-1274669 bp Feature: domain Description: SbcB Location: 1 273253-1 274669 bp Feature: gene Location: 1723581-1724165 bp Ori: QLA27570.1 Feature: domain Description: Terminase_2 Location: 1723626-1724091 bp Feature: domain Description: Terminase_2 Location: 1 723626-1 724091 bp Feature: gene Location: 1724243-1724500 bp Feature: gene Location: 1724901-1726388 bp Ori: QLA27572.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725306-1725996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 725306-1 725996 bp Feature: gene Location: 1726485-1726823 bp Feature: gene Location: 1726816-1727019 bp Feature: gene Location: 1886171-1886404 bp Ori: QLA27730.1 Feature: domain Description: DinI Location: 1886216-1886399 bp Feature: domain Description: DinI Location: 1 88621 6-1 886399 bp Feature: gene Location: 1886416-1886604 bp Feature: gene Location: 1886712-1888199 bp Ori: QLA27732.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1887117-1887807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8871 1 7-1 887807 bp Feature: gene Location: 1888677-1891061 bp Ori: QLA27733.1 Feature: domain Description: Phage_GPA Location: 1889241-1890207 bp Feature: domain Description: Phage_GPA Location: 1 889241 -1 890207 bp Feature: gene Location: 1891058-1891909 bp Ori: QLA27734.1 Feature: domain Description: dam Location: 1891061-1891832 bp Feature: domain Description: dam Location: 1 891 061 -1 891 832 bp Feature: gene Location: 2470998-2471705 bp Feature: gene Location: 2471950-2472741 bp Ori: QLA31097.1 Feature: domain Description: cas7_csf2 Location: 2472271-2472685 bp Feature: domain Description: cas7_csf2 Location: 2472271 -2472685 bp Feature: gene Location: 2474019-2475506 bp Ori: QLA28304.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2474424-2475114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2474424-24751 1 4 bp Feature: gene Location: 2475592-2476014 bp Ori: QLA28305.1 Gene: umuD Feature: domain Description: PRK10276 Location: 2475598-2476000 bp Feature: domain Description: PRK1 0276 Location: 2475598-2476000 bp Feature: gene Location: 2476014-2477285 bp Ori: QLA28306.1 Gene: umuC Feature: domain Description: umuC Location: 2476017-2477277 bp Feature: domain Description: umuC Location: 247601 7-2477277 bp Feature: gene Location: 2564963-2565595 bp Feature: gene Location: 2565624-2567027 bp Ori: QLA28380.1 Feature: domain Description: HTH_28 Location: 2565672-2565813 bp Feature: domain Description: HTH_28 Location: 2565672-256581 3 bp Feature: domain Description: rve Location: 2566053-2566419 bp Feature: domain Description: rve Location: 2566053-256641 9 bp Feature: gene Location: 2567220-2568707 bp Ori: QLA28381.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567625-2568315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2567625-256831 5 bp Feature: gene Location: 2569143-2569457 bp Feature: gene Location: 2569466-2569975 bp Feature: gene Location: 5044623-5045186 bp Ori: QLA30629.1 Feature: domain Description: YbjK Location: 5044629-5045166 bp Feature: domain Description: YbjK Location: 5044629-50451 66 bp Feature: gene Location: 5045309-5046289 bp Ori: QLA31209.1 Feature: domain Description: int Location: 5045312-5046239 bp Feature: domain Description: int Location: 504531 2-5046239 bp Feature: gene Location: 5046777-5048264 bp Ori: QLA30630.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5047182-5047872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50471 82-5047872 bp Feature: gene Location: 5048363-5049307 bp Feature: gene Location: 5049319-5050197 bp Ori: QLA31210.1 Feature: domain Description: Phage_CI_repr Location: 5049346-5049529 bp Feature: domain Description: Phage_CI_repr Location: 5049346-5049529 bp Feature: domain Description: Phage_CI_repr Location: 5049658-5049850 bp Feature: domain Description: Phage_CI_repr Location: 5049658-5049850 bp Feature: domain Description: Phage_CI_C Location: 5049877-5050171 bp Feature: domain Description: Phage_CI_C Location: 5049877-50501 71 bp Feature: gene Location: 5052144-5053001 bp Ori: QLA30638.1 Feature: domain Description: dam Location: 5052147-5052924 bp Feature: domain Description: dam Location: 50521 47-5052924 bp Feature: gene Location: 5052998-5055412 bp Ori: QLA30639.1 Feature: domain Description: Phage_GPA Location: 5053562-5054528 bp Feature: domain Description: Phage_GPA Location: 5053562-5054528 bp Feature: gene Location: 5055888-5057375 bp Ori: QLA30640.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5056293-5056983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5056293-5056983 bp Feature: gene Location: 5057476-5057664 bp Feature: gene Location: 5057675-5057908 bp Ori: QLA30641.1 Feature: domain Description: DinI Location: 5057717-5057903 bp Feature: domain Description: DinI Location: 505771 7-5057903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), RVT-GII, dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592)
DinI (pfam06183), Phage_GPA (pfam05840), dam (TIGR00571), cas7_csf2 (TIGR03115), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), HTH_28 (pfam13518), rve (pfam00665), YbjK (COG3226), int (PHA02601)
Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)