myRT

myRT report for GCA_013390245.1_ASM1339024v1

Download annotations/find similar RTs

Seq: CP046503.1 Citrobacter freundii strain 111 plasmid unnamed1, complete sequence (311349 bp)
Overview 1 RT 1: 33938-37457 bp 2 RT 2: 161409-165825 bp Neighborhood of RT #1 [33938, 37866] COG4453 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [161409, 165825] StbA PHA02517 RVT-GII GIIM Feature: gene Location: 33938-34207 bp Ori: QLD38919.1 Feature: domain Description: COG4453 Location: 33944-34199 bp Feature: domain Description: COG4453 Location: 33944-341 99 bp Feature: gene Location: 34422-34919 bp Feature: domain Description: PHA02517 Location: 34425-34875 bp Feature: domain Description: PHA0251 7 Location: 34425-34875 bp Feature: gene Location: 35000-36508 bp Ori: QLD39202.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35258-35990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35258-35990 bp Feature: domain Description: GIIM Note: maturase Location: 36065-36263 bp Feature: domain Description: GIIM Note: maturase Location: 36065-36263 bp Feature: gene Location: 36817-37188 bp Feature: gene Location: 37181-37866 bp Feature: domain Description: InsE Location: 37193-37457 bp Feature: domain Description: InsE Location: 371 93-37457 bp Feature: gene Location: 161409-162371 bp Ori: QLD39214.1 Feature: domain Description: StbA Location: 161415-162366 bp Feature: domain Description: StbA Location: 1 61 41 5-1 62366 bp Feature: gene Location: 162658-163134 bp Feature: domain Description: PHA02517 Location: 162661-163126 bp Feature: domain Description: PHA0251 7 Location: 1 62661 -1 631 26 bp Feature: gene Location: 163215-164723 bp Ori: QLD39215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163473-164205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 63473-1 64205 bp Feature: domain Description: GIIM Note: maturase Location: 164280-164478 bp Feature: domain Description: GIIM Note: maturase Location: 1 64280-1 64478 bp Feature: gene Location: 165032-165442 bp Feature: gene Location: 165396-165825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4453 (Uncharacterized conserved protein, DUF1778 family ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), StbA (pfam06406)

Seq: CP046505.1 Citrobacter freundii strain 111 plasmid unnamed3, complete sequence (66651 bp)
Overview 1 RT 1: 35052-39776 bp 2 RT 2: 59133-62889 bp Neighborhood of RT #1 [35052, 39814] umuC PRK10276 RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Neighborhood of RT #2 [59133, 62918] InsE RVT-GII GIIM PHA02517 PRK13752 Feature: gene Location: 35052-36323 bp Ori: QLD39387.1 Gene: umuC Feature: domain Description: umuC Location: 35055-36315 bp Feature: domain Description: umuC Location: 35055-36315 bp Feature: gene Location: 36323-36754 bp Ori: QLD39388.1 Gene: umuD Feature: domain Description: PRK10276 Location: 36374-36737 bp Feature: domain Description: PRK102 76 Location: 36374-36737 bp Feature: gene Location: 37163-38647 bp Ori: QLD39408.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37565-38255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37565-382 55 bp Feature: gene Location: 38799-39496 bp Feature: domain Description: Zn_Tnp_IS1 Location: 38805-38907 bp Feature: domain Description: Zn_Tnp_IS1 Location: 38805-38907 bp Feature: domain Description: HTH_Tnp_IS1 Location: 38928-39060 bp Feature: domain Description: HTH_Tnp_IS1 Location: 3892 8-39060 bp Feature: gene Location: 39506-39814 bp Feature: domain Description: Rep_3 Location: 39512-39776 bp Feature: domain Description: Rep_3 Location: 39512 -39776 bp Feature: gene Location: 59133-59818 bp Feature: domain Description: InsE Location: 59145-59409 bp Feature: domain Description: InsE Location: 59145-59409 bp Feature: gene Location: 59802-60182 bp Feature: gene Location: 60491-61999 bp Ori: QLD39410.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60749-61481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60749-61481 bp Feature: domain Description: GIIM Note: maturase Location: 61556-61754 bp Feature: domain Description: GIIM Note: maturase Location: 61556-61754 bp Feature: gene Location: 62080-62430 bp Feature: domain Description: PHA02517 Location: 62083-62425 bp Feature: domain Description: PHA02 517 Location: 62 083-62 42 5 bp Feature: gene Location: 62463-62918 bp Ori: QLD39401.1 Gene: merR Feature: domain Description: PRK13752 Location: 62466-62889 bp Feature: domain Description: PRK13752 Location: 62 466-62 889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051), InsE (COG2963), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK13752 (mercuric resistance operon transcriptional regulator MerR)