myRT

myRT report for GCA_013390305.1_ASM1339030v1

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Seq: CP055233.1 Bradyrhizobium diazoefficiens strain 113-2 chromosome, complete genome (8995154 bp)
Overview 1 RT 1: 708698-715631 bp 2 RT 2: 917105-922873 bp 3 RT 3: 968015-971292 bp 4 RT 4: 977548-982339 bp 5 RT 5: 7774237-7781083 bp 6 RT 6: 7862618-7867453 bp 7 RT 7: 7913723-7919821 bp 8 RT 8: 7992775-7999022 bp 9 RT 9: 8181402-8187568 bp 10 RT 10: 8553097-8559280 bp Neighborhood of RT #1 [708698, 715720] SurA_N_3 SurA PRK12904 RVT-UG12 UDG Neighborhood of RT #2 [917105, 923438] rve RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #3 [968015, 971291] Rve Rve MmsB RVT-GII RVT-GII COG5659 DDE_Tnp_1_4 Neighborhood of RT #4 [977548, 982344] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 INT_RitC_C_like Neighborhood of RT #5 [7774237, 7781088] COG3547 HTH_Tnp_1 RVT-GII GIIM trpD Neighborhood of RT #6 [7862618, 7868082] PRK06215 RVT-GII GIIM PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #7 [7913723, 7919821] DDE_5 RVT-GII DUF4096 Neighborhood of RT #8 [7992775, 7999039] CpaD RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 Neighborhood of RT #9 [8181402, 8187582] DUF1521 DUF1521 DDE_5 RVT-GII DUF4096 DDE_Tnp_1_2 Neighborhood of RT #10 [8553097, 8559399] RVT-Retrons DUF4263 CAP_ED Feature: gene Location: 708698-709621 bp Ori: QLD40126.1 Feature: domain Description: SurA_N_3 Location: 708746-708995 bp Feature: domain Description: SurA_N_3 Location: 708746-708995 bp Feature: domain Description: SurA Location: 709019-709532 bp Feature: domain Description: SurA Location: 70901 9-709532 bp Feature: gene Location: 709975-712815 bp Ori: QLD40127.1 Gene: secA Feature: domain Description: PRK12904 Location: 709987-712807 bp Feature: domain Description: PRK1 2904 Location: 709987-71 2807 bp Feature: gene Location: 713208-714260 bp Ori: QLD40128.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 713589-714045 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 71 3589-71 4045 bp Feature: gene Location: 714265-714975 bp Feature: gene Location: 715025-715720 bp Ori: QLD40130.1 Feature: domain Description: UDG Location: 715292-715631 bp Feature: domain Description: UDG Location: 71 5292-71 5631 bp Feature: gene Location: 917105-917513 bp Feature: gene Location: 917654-919165 bp Ori: QLD40303.1 Feature: domain Description: rve Location: 918161-918482 bp Feature: domain Description: rve Location: 91 81 61 -91 8482 bp Feature: gene Location: 920458-921177 bp Ori: QLD40304.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920785-921175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 920785-921 1 75 bp Feature: gene Location: 921275-921604 bp Ori: QLD40305.1 Feature: domain Description: PHA00617 Location: 921401-921587 bp Feature: domain Description: PHA0061 7 Location: 921 401 -921 587 bp Feature: gene Location: 921745-923438 bp Feature: domain Description: Resolvase Location: 921757-922198 bp Feature: domain Description: Resolvase Location: 921 757-9221 98 bp Feature: domain Description: Recombinase Location: 922285-922645 bp Feature: domain Description: Recombinase Location: 922285-922645 bp Feature: domain Description: Zn_ribbon_recom Location: 922687-922873 bp Feature: domain Description: Zn_ribbon_recom Location: 922687-922873 bp Feature: gene Location: 968015-968753 bp Feature: domain Description: Rve Location: 968042-968207 bp Feature: domain Description: Rve Location: 968042-968207 bp Feature: domain Description: Rve Location: 968324-968567 bp Feature: domain Description: Rve Location: 968324-968567 bp Feature: gene Location: 968769-968888 bp Feature: domain Description: MmsB Location: 968772-968880 bp Feature: domain Description: MmsB Location: 968772-968880 bp Feature: gene Location: 969261-970739 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969669-969747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969669-969747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969999-970362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969999-970362 bp Feature: gene Location: 970836-971084 bp Feature: domain Description: COG5659 Location: 970842-970959 bp Feature: domain Description: COG5659 Location: 970842-970959 bp Feature: gene Location: 971082-971291 bp Feature: domain Description: DDE_Tnp_1_4 Location: 971118-971292 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 971 1 1 8-971 292 bp Feature: gene Location: 977548-978216 bp Ori: QLD40342.1 Feature: domain Description: PHA02518 Location: 977557-978154 bp Feature: domain Description: PHA0251 8 Location: 977557-9781 54 bp Feature: gene Location: 978660-979496 bp Ori: QLD40343.1 Feature: domain Description: LomR Location: 978696-979407 bp Feature: domain Description: LomR Location: 978696-979407 bp Feature: gene Location: 979429-980760 bp Ori: QLD47143.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979723-980386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979723-980386 bp Feature: domain Description: GIIM Note: maturase Location: 980452-980674 bp Feature: domain Description: GIIM Note: maturase Location: 980452-980674 bp Feature: gene Location: 980909-981698 bp Feature: domain Description: DDE_Tnp_IS66 Location: 980912-981338 bp Feature: domain Description: DDE_Tnp_IS66 Location: 98091 2-981 338 bp Feature: gene Location: 981706-982344 bp Feature: domain Description: INT_RitC_C_like Location: 981784-982339 bp Feature: domain Description: INT_RitC_C_like Location: 981 784-982339 bp Feature: gene Location: 7774237-7774521 bp Feature: domain Description: COG3547 Location: 7774255-7774522 bp Feature: domain Description: COG3547 Location: 7774255-7774522 bp Feature: gene Location: 7774611-7775715 bp Feature: domain Description: HTH_Tnp_1 Location: 7774617-7774824 bp Feature: domain Description: HTH_Tnp_1 Location: 777461 7-7774824 bp Feature: gene Location: 7775892-7777136 bp Ori: QLD46130.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7776093-7776747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7776093-7776747 bp Feature: domain Description: GIIM Note: maturase Location: 7776828-7777056 bp Feature: domain Description: GIIM Note: maturase Location: 7776828-7777056 bp Feature: gene Location: 7778645-7778878 bp Feature: gene Location: 7780075-7781088 bp Ori: QLD46132.1 Gene: trpD Feature: domain Description: trpD Location: 7780087-7781083 bp Feature: domain Description: trpD Location: 7780087-7781 083 bp Feature: gene Location: 7862618-7862824 bp Feature: gene Location: 7863520-7864311 bp Ori: QLD46187.1 Feature: domain Description: PRK06215 Location: 7863556-7864306 bp Feature: domain Description: PRK0621 5 Location: 7863556-7864306 bp Feature: gene Location: 7865124-7865720 bp Ori: QLD46188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7865136-7865349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78651 36-7865349 bp Feature: domain Description: GIIM Note: maturase Location: 7865424-7865628 bp Feature: domain Description: GIIM Note: maturase Location: 7865424-7865628 bp Feature: gene Location: 7865855-7866184 bp Ori: QLD46189.1 Feature: domain Description: PHA00617 Location: 7865981-7866167 bp Feature: domain Description: PHA0061 7 Location: 7865981 -78661 67 bp Feature: gene Location: 7866325-7868082 bp Ori: QLD46190.1 Feature: domain Description: Resolvase Location: 7866337-7866778 bp Feature: domain Description: Resolvase Location: 7866337-7866778 bp Feature: domain Description: Recombinase Location: 7866865-7867225 bp Feature: domain Description: Recombinase Location: 7866865-7867225 bp Feature: domain Description: Zn_ribbon_recom Location: 7867267-7867453 bp Feature: domain Description: Zn_ribbon_recom Location: 7867267-7867453 bp Feature: gene Location: 7913723-7914055 bp Feature: gene Location: 7914472-7915822 bp Feature: domain Description: DDE_5 Location: 7914550-7915342 bp Feature: domain Description: DDE_5 Location: 791 4550-791 5342 bp Feature: gene Location: 7915945-7917420 bp Ori: QLD46215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7916353-7917043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 6353-791 7043 bp Feature: gene Location: 7917808-7918564 bp Feature: domain Description: DUF4096 Location: 7917832-7918045 bp Feature: domain Description: DUF4096 Location: 791 7832-791 8045 bp Feature: gene Location: 7918985-7919821 bp Feature: gene Location: 7992775-7993437 bp Ori: QLD46257.1 Feature: domain Description: CpaD Location: 7992808-7993348 bp Feature: domain Description: CpaD Location: 7992808-7993348 bp Feature: gene Location: 7993633-7995948 bp Feature: gene Location: 7996241-7996912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7996244-7996547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7996244-7996547 bp Feature: gene Location: 7996911-7998569 bp Feature: domain Description: Resolvase Location: 7996923-7997364 bp Feature: domain Description: Resolvase Location: 7996923-7997364 bp Feature: domain Description: Recombinase Location: 7997451-7997811 bp Feature: domain Description: Recombinase Location: 7997451 -799781 1 bp Feature: domain Description: Zn_ribbon_recom Location: 7997853-7998039 bp Feature: domain Description: Zn_ribbon_recom Location: 7997853-7998039 bp Feature: gene Location: 7998710-7999039 bp Ori: QLD46259.1 Feature: domain Description: PHA00617 Location: 7998836-7999022 bp Feature: domain Description: PHA0061 7 Location: 7998836-7999022 bp Feature: gene Location: 8181402-8182940 bp Ori: QLD46381.1 Feature: domain Description: DUF1521 Location: 8181738-8182239 bp Feature: domain Description: DUF1 521 Location: 81 81 738-81 82239 bp Feature: domain Description: DUF1521 Location: 8182374-8182875 bp Feature: domain Description: DUF1 521 Location: 81 82374-81 82875 bp Feature: gene Location: 8183840-8185189 bp Ori: QLD46382.1 Feature: domain Description: DDE_5 Location: 8183918-8184710 bp Feature: domain Description: DDE_5 Location: 81 8391 8-81 8471 0 bp Feature: gene Location: 8185288-8186763 bp Ori: QLD46383.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8185696-8186386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 85696-81 86386 bp Feature: gene Location: 8187585-8187932 bp Ori: QLD46384.1 Feature: domain Description: DUF4096 Location: 8187630-8187843 bp Feature: domain Description: DUF4096 Location: 81 87630-81 87843 bp Feature: gene Location: 8187151-8187582 bp Ori: QLD46384.1 Feature: domain Description: DDE_Tnp_1_2 Location: 8187325-8187568 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 81 87325-81 87568 bp Feature: gene Location: 8553097-8553564 bp Feature: gene Location: 8553700-8554335 bp Feature: gene Location: 8554721-8556361 bp Ori: QLD46700.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8554778-8555411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8554778-855541 1 bp Feature: gene Location: 8556450-8557613 bp Ori: QLD47555.1 Feature: domain Description: DUF4263 Location: 8557026-8557557 bp Feature: domain Description: DUF4263 Location: 8557026-8557557 bp Feature: gene Location: 8558923-8559399 bp Ori: QLD46701.1 Feature: domain Description: CAP_ED Location: 8558977-8559280 bp Feature: domain Description: CAP_ED Location: 8558977-8559280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SurA_N_3 (pfam13624), SurA (COG0760), PRK12904 (preprotein translocase subunit SecA; Reviewed), RVT-UG12, UDG (smart00986), rve (pfam00665), RVT-GII, PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), Rve (COG3316), MmsB (COG2084), COG5659 (SRSO17 transposase ), DDE_Tnp_1_4 (pfam13701), PHA02518 (ParA-like protein; Provisional), LomR (COG3637), GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), INT_RitC_C_like (cd01182)
COG3547 (Transposase ), HTH_Tnp_1 (pfam01527), trpD (TIGR01245), PRK06215 (hypothetical protein; Provisional), DDE_5 (pfam13546), DUF4096 (pfam13340), CpaD (COG5461), DUF1521 (pfam07481), DDE_Tnp_1_2 (pfam13586), RVT-Retrons
DUF4263 (pfam14082), CAP_ED (cl00047)