myRT

myRT report for GCA_013393385.1_ASM1339338v1

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Seq: AP023239.1 Paenibacillus sp. URB8-2 DNA, complete genome (5583866 bp)
Overview 1 RT 1: 487275-494881 bp 2 RT 2: 3265902-3272244 bp 3 RT 3: 3337900-3344393 bp Neighborhood of RT #1 [487275, 494898] Ndh DoxX Tpp15 RVT_N RVT-GII GIIM HNHc 5TM-5TMR_LYT TMAO_torS Neighborhood of RT #2 [3265902, 3272255] YdcF-like COG2306 RVT-GII GIIM MrcB Hfq Neighborhood of RT #3 [3337900, 3344434] recX recA RVT-GII GIIM tigrfam_recA PRK00549 Feature: gene Location: 487275-489155 bp Ori: BCG57019.1 Feature: domain Description: Ndh Location: 487281-488502 bp Feature: domain Description: Ndh Location: 487281 -488502 bp Feature: domain Description: DoxX Location: 488559-488994 bp Feature: domain Description: DoxX Location: 488559-488994 bp Feature: gene Location: 489203-489763 bp Ori: BCG57020.1 Feature: domain Description: Tpp15 Location: 489233-489761 bp Feature: domain Description: Tpp1 5 Location: 489233-489761 bp Feature: gene Location: 490622-492478 bp Ori: BCG57021.1 Feature: domain Description: RVT_N Location: 490679-490922 bp Feature: domain Description: RVT_N Location: 490679-490922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490979-491651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490979-491 651 bp Feature: domain Description: GIIM Note: maturase Location: 491759-491990 bp Feature: domain Description: GIIM Note: maturase Location: 491 759-491 990 bp Feature: domain Description: HNHc Note: nucleases Location: 492197-492365 bp Feature: domain Description: HNHc Note: nucleases Location: 4921 97-492365 bp Feature: gene Location: 493098-493373 bp Feature: gene Location: 493483-494898 bp Ori: BCG57023.1 Feature: domain Description: 5TM-5TMR_LYT Location: 493558-494041 bp Feature: domain Description: 5TM-5TMR_LYT Location: 493558-494041 bp Feature: domain Description: TMAO_torS Location: 494083-494881 bp Feature: domain Description: TMAO_torS Location: 494083-494881 bp Feature: gene Location: 3265902-3266549 bp Ori: BCG59541.1 Feature: domain Description: YdcF-like Location: 3266088-3266484 bp Feature: domain Description: YdcF-like Location: 3266088-3266484 bp Feature: gene Location: 3266550-3267107 bp Ori: BCG59542.1 Feature: domain Description: COG2306 Location: 3266553-3267042 bp Feature: domain Description: COG2306 Location: 3266553-3267042 bp Feature: gene Location: 3267280-3268572 bp Ori: BCG59543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267580-3268213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3267580-326821 3 bp Feature: domain Description: GIIM Note: maturase Location: 3268339-3268522 bp Feature: domain Description: GIIM Note: maturase Location: 3268339-3268522 bp Feature: gene Location: 3269194-3271806 bp Ori: BCG59544.1 Gene: pbpF Feature: domain Description: MrcB Location: 3269260-3271354 bp Feature: domain Description: MrcB Location: 3269260-3271 354 bp Feature: gene Location: 3272016-3272255 bp Ori: BCG59545.1 Gene: hfq_2 Feature: domain Description: Hfq Location: 3272019-3272244 bp Feature: domain Description: Hfq Location: 327201 9-3272244 bp Feature: gene Location: 3337900-3338634 bp Ori: BCG59606.1 Gene: recX Feature: domain Description: recX Location: 3337984-3338599 bp Feature: domain Description: recX Location: 3337984-3338599 bp Feature: gene Location: 3338765-3339421 bp Ori: BCG59607.1 Feature: domain Description: recA Location: 3338768-3339395 bp Feature: domain Description: recA Location: 3338768-3339395 bp Feature: gene Location: 3339670-3341790 bp Ori: BCG59608.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3340198-3340888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33401 98-3340888 bp Feature: domain Description: GIIM Note: maturase Location: 3340975-3341179 bp Feature: domain Description: GIIM Note: maturase Location: 3340975-3341 1 79 bp Feature: gene Location: 3342418-3342813 bp Ori: BCG59609.1 Feature: domain Description: tigrfam_recA Location: 3342427-3342787 bp Feature: domain Description: tigrfam_recA Location: 3342427-3342787 bp Feature: gene Location: 3343148-3344434 bp Ori: BCG59610.1 Gene: cinA Feature: domain Description: PRK00549 Location: 3343154-3344393 bp Feature: domain Description: PRK00549 Location: 33431 54-3344393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ndh (COG1252), DoxX (pfam07681), Tpp15 (COG4939), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), 5TM-5TMR_LYT (pfam07694), TMAO_torS (TIGR02956), YdcF-like (cl00630)
COG2306 (Predicted RNA-binding protein, associated with RNAse of E/G family ), MrcB (COG0744), Hfq (TIGR02383), recX (PRK14137), recA (PRK09519), tigrfam_recA (TIGR02012), PRK00549 (competence damage-inducible protein A; Provisional)