myRT

myRT report for GCA_013393665.1_ASM1339366v1

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Seq: CP046402.1 Pseudomonas aeruginosa strain SE5331 chromosome, complete genome (7056430 bp)
Overview 1 RT 1: 2106323-2111871 bp 2 RT 2: 4101505-4108372 bp Neighborhood of RT #1 [2106323, 2112062] ribD TIGR00244 RVT_N RVT-GII GIIM HNHc YbaY Nnt1 Neighborhood of RT #2 [4101505, 4108380] HTH_17 Phage_int_SAM_4 INT_Rci_Hp1_C RVT-GII Intron_maturas2 HNHc PRK10792 cysS Feature: gene Location: 2106323-2107444 bp Ori: QLF14423.1 Gene: ribD Feature: domain Description: ribD Location: 2106338-2107415 bp Feature: domain Description: ribD Location: 21 06338-21 0741 5 bp Feature: gene Location: 2107441-2107905 bp Ori: QLF14424.1 Gene: nrdR Feature: domain Description: TIGR00244 Location: 2107444-2107882 bp Feature: domain Description: TIGR00244 Location: 21 07444-21 07882 bp Feature: gene Location: 2108002-2109708 bp Ori: QLF14425.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2108059-2108296 bp Feature: domain Description: RVT_N Location: 21 08059-21 08296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2108347-2108983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 08347-21 08983 bp Feature: domain Description: GIIM Note: maturase Location: 2109034-2109268 bp Feature: domain Description: GIIM Note: maturase Location: 21 09034-21 09268 bp Feature: domain Description: HNHc Note: nucleases Location: 2109487-2109652 bp Feature: domain Description: HNHc Note: nucleases Location: 21 09487-21 09652 bp Feature: gene Location: 2110933-2111403 bp Ori: QLF14426.1 Feature: domain Description: YbaY Location: 2110936-2111398 bp Feature: domain Description: YbaY Location: 21 1 0936-21 1 1 398 bp Feature: gene Location: 2111400-2112062 bp Ori: QLF14427.1 Feature: domain Description: Nnt1 Location: 2111406-2111871 bp Feature: domain Description: Nnt1 Location: 21 1 1 406-21 1 1 871 bp Feature: gene Location: 4101505-4101846 bp Ori: QLF16166.1 Feature: domain Description: HTH_17 Location: 4101544-4101688 bp Feature: domain Description: HTH_1 7 Location: 41 01 544-41 01 688 bp Feature: gene Location: 4101732-4102841 bp Ori: QLF16167.1 Feature: domain Description: Phage_int_SAM_4 Location: 4101930-4102125 bp Feature: domain Description: Phage_int_SAM_4 Location: 41 01 930-41 021 25 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4102209-4102710 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 41 02209-41 0271 0 bp Feature: gene Location: 4103154-4105022 bp Ori: QLF16168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4103430-4104255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 03430-41 04255 bp Feature: domain Description: Intron_maturas2 Location: 4104372-4104645 bp Feature: domain Description: Intron_maturas2 Location: 41 04372-41 04645 bp Feature: domain Description: HNHc Note: nucleases Location: 4104792-4104951 bp Feature: domain Description: HNHc Note: nucleases Location: 41 04792-41 04951 bp Feature: gene Location: 4106086-4106940 bp Ori: QLF16169.1 Gene: folD Feature: domain Description: PRK10792 Location: 4106089-4106935 bp Feature: domain Description: PRK1 0792 Location: 41 06089-41 06935 bp Feature: gene Location: 4106998-4108380 bp Ori: QLF16170.1 Feature: domain Description: cysS Location: 4107004-4108372 bp Feature: domain Description: cysS Location: 41 07004-41 08372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribD (PRK10786), TIGR00244 (transcriptional regulator NrdR), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YbaY (COG3126), Nnt1 (COG3897), HTH_17 (pfam12728), Phage_int_SAM_4 (pfam13495)
INT_Rci_Hp1_C (cd00796), Intron_maturas2 (pfam01348), PRK10792 (bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD), cysS (TIGR00435)