myRT

myRT report for GCA_013393865.1_ASM1339386v1

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Seq: CP040101.1 Vibrio parahaemolyticus strain LVP2 chromosome 1, complete sequence (3589443 bp)
Overview 1 RT 1: 1236590-1244847 bp 2 RT 2: 1681371-1683953 bp 3 RT 3: 1731111-1734058 bp 4 RT 4: 3027221-3033690 bp Neighborhood of RT #1 [1236590, 1245851] INT_ICEBs1_C_like COG5340 RVT-UG1 COG5635 Neighborhood of RT #2 [1681371, 1683953] DUF3265 RVT-UG11 DUF3265 Neighborhood of RT #3 [1731111, 1734126] DUF3265 RVT-Retrons TIR_2 TPR_12 Neighborhood of RT #4 [3027221, 3033690] HsdS RMtype1_S_EcoKI-TRD2-CR2_like RMtype1_S_EcoKI-TRD2-CR2_like PRK04247 RVT-UG2 PinE Feature: gene Location: 1236590-1237681 bp Ori: QLE30203.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1236962-1237487 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 236962-1 237487 bp Feature: gene Location: 1238072-1238596 bp Ori: QLE30204.1 Feature: domain Description: COG5340 Location: 1238105-1238423 bp Feature: domain Description: COG5340 Location: 1 2381 05-1 238423 bp Feature: gene Location: 1238725-1242456 bp Ori: QLE30205.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1239346-1239835 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 239346-1 239835 bp Feature: gene Location: 1242449-1242889 bp Feature: gene Location: 1242996-1245851 bp Ori: QLE30207.1 Feature: domain Description: COG5635 Location: 1243770-1244847 bp Feature: domain Description: COG5635 Location: 1 243770-1 244847 bp Feature: gene Location: 1681371-1681556 bp Feature: gene Location: 1681711-1681788 bp Ori: QLE32449.1 Feature: domain Description: DUF3265 Location: 1681714-1681786 bp Feature: domain Description: DUF3265 Location: 1 681 71 4-1 681 786 bp Feature: gene Location: 1681816-1682586 bp Ori: QLE30627.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1681948-1682398 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 681 948-1 682398 bp Feature: gene Location: 1682986-1683078 bp Ori: QLE32451.1 Feature: domain Description: DUF3265 Location: 1682995-1683076 bp Feature: domain Description: DUF3265 Location: 1 682995-1 683076 bp Feature: gene Location: 1683132-1683953 bp Feature: gene Location: 1731111-1731533 bp Feature: gene Location: 1731558-1731650 bp Ori: QLE30701.1 Feature: domain Description: DUF3265 Location: 1731567-1731648 bp Feature: domain Description: DUF3265 Location: 1 731 567-1 731 648 bp Feature: gene Location: 1731696-1733273 bp Ori: QLE30702.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1731933-1732545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 731 933-1 732545 bp Feature: domain Description: TIR_2 Location: 1732875-1733229 bp Feature: domain Description: TIR_2 Location: 1 732875-1 733229 bp Feature: gene Location: 1733513-1733607 bp Feature: gene Location: 1733617-1734126 bp Ori: QLE30703.1 Feature: domain Description: TPR_12 Location: 1733875-1734058 bp Feature: domain Description: TPR_1 2 Location: 1 733875-1 734058 bp Feature: gene Location: 3027221-3028924 bp Ori: QLE31851.1 Feature: domain Description: HsdS Location: 3027236-3027482 bp Feature: domain Description: HsdS Location: 3027236-3027482 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 3027854-3028007 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 3027854-3028007 bp Feature: domain Description: RMtype1_S_EcoKI-TRD2-CR2_like Location: 3028325-3028886 bp Feature: domain Description: RMtype1 _S_EcoKI-TRD2-CR2_like Location: 3028325-3028886 bp Feature: gene Location: 3028927-3029922 bp Ori: QLE31852.1 Feature: domain Description: PRK04247 Location: 3029110-3029227 bp Feature: domain Description: PRK04247 Location: 30291 1 0-3029227 bp Feature: gene Location: 3030543-3031853 bp Ori: QLE31853.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3030744-3031557 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3030744-3031 557 bp Feature: gene Location: 3032183-3032773 bp Ori: QLE32517.1 Feature: domain Description: PinE Location: 3032192-3032753 bp Feature: domain Description: PinE Location: 30321 92-3032753 bp Feature: gene Location: 3033403-3033690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-UG1, COG5635 (Predicted NTPase, NACHT family domain ), DUF3265 (pfam11665), RVT-UG11, RVT-Retrons, TIR_2 (pfam13676), TPR_12 (pfam13424), HsdS (COG0732)
RMtype1_S_EcoKI-TRD2-CR2_like (cd17261), PRK04247 (endonuclease NucS), RVT-UG2, PinE (COG1961)