myRT

myRT report for GCA_013393905.1_ASM1339390v1

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Seq: CP040273.1 Nostoc sp. C052 plasmid pC052_A, complete sequence (541557 bp)
Overview 1 RT 1: 89175-96815 bp Neighborhood of RT #1 [89175, 96838] RMtype1_S_EcoJA65PI-TRD1-CR1_like RMtype1_S_EcoJA65PI-TRD1-CR1_like DarT RVT-CRISPR-like COG0610 DUF45 Feature: gene Location: 89175-90512 bp Ori: QLE45060.1 Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 89280-89805 bp Feature: domain Description: RMtype1 _S_EcoJA65PI-TRD1 -CR1 _like Location: 89280-89805 bp Feature: domain Description: RMtype1_S_EcoJA65PI-TRD1-CR1_like Location: 89988-90471 bp Feature: domain Description: RMtype1 _S_EcoJA65PI-TRD1 -CR1 _like Location: 89988-90471 bp Feature: gene Location: 90552-91068 bp Feature: domain Description: DarT Location: 90570-90687 bp Feature: domain Description: DarT Location: 90570-90687 bp Feature: gene Location: 91046-92566 bp Ori: QLE45061.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 91292-92015 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 91 292-9201 5 bp Feature: gene Location: 92961-96143 bp Ori: QLE45062.1 Feature: domain Description: COG0610 Location: 92991-95883 bp Feature: domain Description: COG061 0 Location: 92991 -95883 bp Feature: gene Location: 96140-96838 bp Ori: QLE45063.1 Feature: domain Description: DUF45 Location: 96200-96815 bp Feature: domain Description: DUF45 Location: 96200-9681 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_EcoJA65PI-TRD1-CR1_like (cd17256), DarT, RVT-CRISPR, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863)

Seq: CP040272.1 Nostoc sp. C052 chromosome, complete genome (7828336 bp)
Overview 1 RT 1: 739494-742428 bp 2 RT 2: 845000-850239 bp 3 RT 3: 991280-998518 bp 4 RT 4: 1370319-1373806 bp 5 RT 5: 1570606-1579849 bp Neighborhood of RT #1 [739494, 742463] DDE_Tnp_1_assoc RVT_N RVT-GII HTH_Tnp_4 group_II_RT_mat Neighborhood of RT #2 [845000, 850274] HTH_Tnp_4 DDE_3 RVT_N RVT-GII RhaT Neighborhood of RT #3 [991280, 998589] COG1233 RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 DUF820 Neighborhood of RT #4 [1370319, 1373806] COG5659 RVT-GII McrA Neighborhood of RT #5 [1570606, 1579849] TPR_12 TPR_10 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_10 CHAT HTH_XRE DUF4384 RVT-CRISPR cas1 beta_CA_cladeD Feature: gene Location: 739494-740048 bp Ori: QLE39578.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 739509-739773 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 739509-739773 bp Feature: gene Location: 740539-740745 bp Ori: QLE39579.1 Feature: domain Description: RVT_N Location: 740575-740719 bp Feature: domain Description: RVT_N Location: 740575-740719 bp Feature: gene Location: 740794-740958 bp Ori: QLE39580.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740803-740941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740803-740941 bp Feature: gene Location: 741006-741913 bp Feature: domain Description: HTH_Tnp_4 Location: 741192-741339 bp Feature: domain Description: HTH_Tnp_4 Location: 741192 -741339 bp Feature: gene Location: 742035-742463 bp Ori: QLE39581.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 742128-742428 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 742 12 8-742 42 8 bp Feature: gene Location: 845000-845907 bp Feature: domain Description: HTH_Tnp_4 Location: 845186-845333 bp Feature: domain Description: HTH_Tnp_4 Location: 845186-845333 bp Feature: gene Location: 845973-846533 bp Feature: domain Description: DDE_3 Location: 846024-846429 bp Feature: domain Description: DDE_3 Location: 84602 4-84642 9 bp Feature: gene Location: 846590-847511 bp Feature: domain Description: RVT_N Location: 846620-846857 bp Feature: domain Description: RVT_N Location: 84662 0-846857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846917-847016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846917-847016 bp Feature: gene Location: 848358-848978 bp Feature: gene Location: 849312-850274 bp Ori: QLE39656.1 Feature: domain Description: RhaT Location: 849405-850239 bp Feature: domain Description: RhaT Location: 849405-8502 39 bp Feature: gene Location: 991280-991624 bp Feature: gene Location: 991936-993522 bp Ori: QLE39766.1 Feature: domain Description: COG1233 Location: 991963-993460 bp Feature: domain Description: COG12 33 Location: 991963-993460 bp Feature: gene Location: 994400-995506 bp Ori: QLE39767.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 994634-995243 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 994634-9952 43 bp Feature: gene Location: 996364-997902 bp Ori: QLE39768.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 996400-996547 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 996400-996547 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 996796-996904 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 996796-996904 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 997216-997855 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 9972 16-997855 bp Feature: gene Location: 998020-998589 bp Ori: QLE39769.1 Feature: domain Description: DUF820 Location: 998092-998518 bp Feature: domain Description: DUF82 0 Location: 998092 -998518 bp Feature: gene Location: 1370319-1371668 bp Ori: QLE40002.1 Feature: domain Description: COG5659 Location: 1370352-1371348 bp Feature: domain Description: COG5659 Location: 1370352 -1371348 bp Feature: gene Location: 1371739-1372392 bp Feature: gene Location: 1372373-1373257 bp Ori: QLE40004.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372376-1372637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1372 376-1372 637 bp Feature: domain Description: McrA Location: 1372871-1373213 bp Feature: domain Description: McrA Location: 1372 871-13732 13 bp Feature: gene Location: 1373422-1373538 bp Feature: gene Location: 1373714-1373806 bp Feature: gene Location: 1570606-1574352 bp Ori: QLE40108.1 Feature: domain Description: TPR_12 Location: 1570660-1570798 bp Feature: domain Description: TPR_12 Location: 1570660-1570798 bp Feature: domain Description: TPR_10 Location: 1570879-1570996 bp Feature: domain Description: TPR_10 Location: 1570879-1570996 bp Feature: domain Description: TPR_12 Location: 1571002-1571227 bp Feature: domain Description: TPR_12 Location: 1571002 -15712 2 7 bp Feature: domain Description: TPR_12 Location: 1571263-1571479 bp Feature: domain Description: TPR_12 Location: 15712 63-1571479 bp Feature: domain Description: TPR_10 Location: 1571512-1571623 bp Feature: domain Description: TPR_10 Location: 1571512 -157162 3 bp Feature: domain Description: TPR_12 Location: 1571653-1571857 bp Feature: domain Description: TPR_12 Location: 1571653-1571857 bp Feature: domain Description: TPR_12 Location: 1571884-1572109 bp Feature: domain Description: TPR_12 Location: 1571884-1572 109 bp Feature: domain Description: TPR_12 Location: 1572139-1572361 bp Feature: domain Description: TPR_12 Location: 1572 139-1572 361 bp Feature: domain Description: TPR_10 Location: 1572391-1572457 bp Feature: domain Description: TPR_10 Location: 1572 391-1572 457 bp Feature: domain Description: CHAT Location: 1573222-1574332 bp Feature: domain Description: CHAT Location: 15732 2 2 -1574332 bp Feature: gene Location: 1575312-1576061 bp Ori: QLE40109.1 Feature: domain Description: HTH_XRE Location: 1575360-1575507 bp Feature: domain Description: HTH_XRE Location: 1575360-1575507 bp Feature: domain Description: DUF4384 Location: 1575684-1575915 bp Feature: domain Description: DUF4384 Location: 1575684-1575915 bp Feature: gene Location: 1576337-1578361 bp Ori: QLE44679.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1576526-1577135 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 157652 6-1577135 bp Feature: domain Description: cas1 Location: 1577351-1578332 bp Feature: domain Description: cas1 Location: 1577351-1578332 bp Feature: gene Location: 1579119-1579700 bp Ori: QLE40110.1 Feature: domain Description: beta_CA_cladeD Location: 1579206-1579665 bp Feature: domain Description: beta_CA_cladeD Location: 15792 06-1579665 bp Feature: gene Location: 1579745-1579849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT_N (pfam13655), RVT-GII, HTH_Tnp_4 (pfam13613), group_II_RT_mat (TIGR04416), DDE_3 (pfam13358), RhaT (TIGR00776), COG1233 (Phytoene dehydrogenase-related protein ), RVT-Retrons, SPFH_eoslipins_u2 (cd13438)
DUF820, COG5659 (SRSO17 transposase ), McrA (COG4058), TPR_12 (pfam13424), TPR_10 (pfam13374), CHAT (pfam12770), HTH_XRE (smart00530), DUF4384 (pfam14326), RVT-CRISPR, cas1 (TIGR00287)
beta_CA_cladeD (cd03379)