myRT

myRT report for GCA_013393925.1_ASM1339392v1

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Seq: CP040292.1 Nostoc sp. C057 plasmid p057_K (79989 bp)
Overview 1 RT 1: 9163-17549 bp Neighborhood of RT #1 [9163, 17578] RVT-GII McrA RVT_N RVT_N RVT-GII FAAL FadM Feature: gene Location: 9163-10104 bp Feature: gene Location: 10143-10514 bp Feature: gene Location: 10580-11593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10586-11009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0586-1 1 009 bp Feature: domain Description: McrA Location: 11246-11570 bp Feature: domain Description: McrA Location: 1 1 246-1 1 570 bp Feature: gene Location: 11679-13389 bp Gene: ltrA Feature: domain Description: RVT_N Location: 11727-11952 bp Feature: domain Description: RVT_N Location: 1 1 727-1 1 952 bp Feature: gene Location: 14099-14659 bp Feature: domain Description: RVT_N Location: 14132-14378 bp Feature: domain Description: RVT_N Location: 1 41 32-1 4378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14429-14660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4429-1 4660 bp Feature: gene Location: 15511-17115 bp Ori: QLE53961.1 Feature: domain Description: FAAL Location: 15547-17071 bp Feature: domain Description: FAAL Location: 1 5547-1 7071 bp Feature: gene Location: 17165-17578 bp Ori: QLE53918.1 Feature: domain Description: FadM Location: 17186-17549 bp Feature: domain Description: FadM Location: 1 71 86-1 7549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, McrA (COG4058), RVT_N (pfam13655), FAAL (cd05931), FadM (COG0824)

Seq: CP040281.1 Nostoc sp. C057 chromosome, complete genome (7495445 bp)
Overview 1 RT 1: 257659-262676 bp 2 RT 2: 1220407-1227697 bp 3 RT 3: 2546977-2555482 bp 4 RT 4: 2686499-2691821 bp 5 RT 5: 5649807-5655300 bp 6 RT 6: 7141537-7145900 bp Neighborhood of RT #1 [257659, 263005] RVT_N RVT-GII purN COG4249 Neighborhood of RT #2 [1220407, 1227720] COP23 RVT-Retrons RVT-Retrons SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 DUF4238 Neighborhood of RT #3 [2546977, 2555550] DUF3370 RVT-GII GIIM McrA PinE Zn_ribbon_recom RVT_N RVT-GII InsA DUF820 Neighborhood of RT #4 [2686499, 2691826] YafQ RVT_N RVT-GII GIIM HNHc Ssb PRK06185 Neighborhood of RT #5 [5649807, 5655308] cysS YejR RVT-GII TM_helix TM_helix TM_helix TM_helix TM_helix Polyketide_cyc2 Neighborhood of RT #6 [7141537, 7146037] HTH_Tnp_4 RVT-GII ALDH_DDALDH nitrilase_4 Feature: gene Location: 257659-258819 bp Feature: gene Location: 258844-259140 bp Ori: QLE52174.1 Feature: domain Description: RVT_N Location: 258856-259102 bp Feature: domain Description: RVT_N Location: 2 58856-2 59102 bp Feature: gene Location: 259863-260234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259986-260082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 59986-2 60082 bp Feature: gene Location: 260773-261423 bp Ori: QLE46880.1 Feature: domain Description: purN Location: 260851-261406 bp Feature: domain Description: purN Location: 2 60851-2 61406 bp Feature: gene Location: 261962-263005 bp Feature: domain Description: COG4249 Location: 261965-262676 bp Feature: domain Description: COG42 49 Location: 2 61965-2 62 676 bp Feature: gene Location: 1220407-1220901 bp Ori: QLE47578.1 Feature: domain Description: COP23 Location: 1220512-1220872 bp Feature: domain Description: COP2 3 Location: 12 2 0512 -12 2 0872 bp Feature: gene Location: 1221820-1222834 bp Feature: gene Location: 1222867-1223298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1223059-1223296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 2 3059-12 2 32 96 bp Feature: gene Location: 1223593-1224219 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1223599-1223968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 2 3599-12 2 3968 bp Feature: gene Location: 1225140-1226675 bp Ori: QLE47579.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 1225173-1225323 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 12 2 5173-12 2 532 3 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1225572-1225680 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 12 2 5572 -12 2 5680 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1225992-1226631 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 12 2 5992 -12 2 6631 bp Feature: gene Location: 1226773-1227720 bp Ori: QLE47580.1 Feature: domain Description: DUF4238 Location: 1226791-1227697 bp Feature: domain Description: DUF42 38 Location: 12 2 6791-12 2 7697 bp Feature: gene Location: 2546977-2547478 bp Feature: gene Location: 2547510-2548877 bp Ori: QLE48634.1 Feature: domain Description: DUF3370 Location: 2547591-2548860 bp Feature: domain Description: DUF3370 Location: 2 547591-2 548860 bp Feature: gene Location: 2549142-2550476 bp Ori: QLE48635.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2549154-2549613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 549154-2 549613 bp Feature: domain Description: GIIM Note: maturase Location: 2549718-2549928 bp Feature: domain Description: GIIM Note: maturase Location: 2 549718-2 54992 8 bp Feature: domain Description: McrA Location: 2550060-2550336 bp Feature: domain Description: McrA Location: 2 550060-2 550336 bp Feature: gene Location: 2550851-2552896 bp Ori: QLE48636.1 Feature: domain Description: PinE Location: 2550893-2551574 bp Feature: domain Description: PinE Location: 2 550893-2 551574 bp Feature: domain Description: Zn_ribbon_recom Location: 2551835-2551991 bp Feature: domain Description: Zn_ribbon_recom Location: 2 551835-2 551991 bp Feature: gene Location: 2552914-2553483 bp Ori: QLE48637.1 Feature: domain Description: RVT_N Location: 2552959-2553205 bp Feature: domain Description: RVT_N Location: 2 552 959-2 5532 05 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2553247-2553481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5532 47-2 553481 bp Feature: gene Location: 2554118-2554833 bp Feature: domain Description: InsA Location: 2554121-2554409 bp Feature: domain Description: InsA Location: 2 55412 1-2 554409 bp Feature: gene Location: 2555038-2555550 bp Feature: domain Description: DUF820 Location: 2555053-2555482 bp Feature: domain Description: DUF82 0 Location: 2 555053-2 555482 bp Feature: gene Location: 2686499-2686729 bp Feature: gene Location: 2686710-2686991 bp Ori: QLE52310.1 Feature: domain Description: YafQ Location: 2686713-2686989 bp Feature: domain Description: YafQ Location: 2 686713-2 686989 bp Feature: gene Location: 2687228-2688958 bp Ori: QLE48726.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2687258-2687504 bp Feature: domain Description: RVT_N Location: 2 6872 58-2 687504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2687546-2688224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 687546-2 6882 2 4 bp Feature: domain Description: GIIM Note: maturase Location: 2688302-2688536 bp Feature: domain Description: GIIM Note: maturase Location: 2 688302 -2 688536 bp Feature: domain Description: HNHc Note: nucleases Location: 2688734-2688875 bp Feature: domain Description: HNHc Note: nucleases Location: 2 688734-2 688875 bp Feature: gene Location: 2689500-2690174 bp Ori: QLE48727.1 Feature: domain Description: Ssb Location: 2689503-2690067 bp Feature: domain Description: Ssb Location: 2 689503-2 690067 bp Feature: gene Location: 2690570-2691826 bp Ori: QLE48728.1 Feature: domain Description: PRK06185 Location: 2690642-2691821 bp Feature: domain Description: PRK06185 Location: 2 690642 -2 69182 1 bp Feature: gene Location: 5649807-5651261 bp Ori: QLE50893.1 Feature: domain Description: cysS Location: 5649810-5651256 bp Feature: domain Description: cysS Location: 5649810-56512 56 bp Feature: gene Location: 5651399-5652505 bp Ori: QLE50894.1 Feature: domain Description: YejR Location: 5651456-5652464 bp Feature: domain Description: YejR Location: 5651456-5652 464 bp Feature: gene Location: 5652611-5652793 bp Ori: QLE50895.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5652659-5652782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5652 659-5652 782 bp Feature: gene Location: 5652885-5654537 bp Ori: QLE50896.1 Feature: domain Description: TM_helix Location: 5653023-5653155 bp Feature: domain Description: TM_helix Location: 565302 3-5653155 bp Feature: domain Description: TM_helix Location: 5653296-5653437 bp Feature: domain Description: TM_helix Location: 56532 96-5653437 bp Feature: domain Description: TM_helix Location: 5653584-5653725 bp Feature: domain Description: TM_helix Location: 5653584-565372 5 bp Feature: domain Description: TM_helix Location: 5653872-5654013 bp Feature: domain Description: TM_helix Location: 5653872 -5654013 bp Feature: domain Description: TM_helix Location: 5654190-5654298 bp Feature: domain Description: TM_helix Location: 5654190-56542 98 bp Feature: gene Location: 5654868-5655308 bp Ori: QLE50897.1 Feature: domain Description: Polyketide_cyc2 Location: 5654883-5655300 bp Feature: domain Description: Polyketide_cyc2 Location: 5654883-5655300 bp Feature: gene Location: 7141537-7141936 bp Ori: QLE51931.1 Feature: domain Description: HTH_Tnp_4 Location: 7141678-7141822 bp Feature: domain Description: HTH_Tnp_4 Location: 7141678-714182 2 bp Feature: gene Location: 7141936-7142360 bp Feature: gene Location: 7143083-7143394 bp Ori: QLE51932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7143206-7143302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71432 06-7143302 bp Feature: gene Location: 7143452-7144870 bp Ori: QLE51933.1 Feature: domain Description: ALDH_DDALDH Location: 7143479-7144820 bp Feature: domain Description: ALDH_DDALDH Location: 7143479-714482 0 bp Feature: gene Location: 7144994-7146037 bp Ori: QLE51934.1 Feature: domain Description: nitrilase_4 Location: 7145027-7145900 bp Feature: domain Description: nitrilase_4 Location: 714502 7-7145900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, purN (PRK05647), COG4249 (Uncharacterized protein, contains caspase domain ), COP23 (pfam14218), RVT-Retrons, SPFH_eoslipins_u2 (cd13438), DUF4238 (pfam14022), DUF3370 (pfam11850), GIIM (pfam08388)
McrA (COG4058), PinE (COG1961), Zn_ribbon_recom (pfam13408), InsA (COG3677), DUF820, YafQ (COG3041), HNHc (smart00507), Ssb (COG0629), PRK06185 (FAD-dependent oxidoreductase), cysS (TIGR00435)
YejR (COG0523), TM_helix (pfam05552), Polyketide_cyc2 (pfam10604), HTH_Tnp_4 (pfam13613), ALDH_DDALDH (cd07099), nitrilase_4 (cd07582)

Seq: CP040290.1 Nostoc sp. C057 plasmid p057_I (158763 bp)
Overview 1 RT 1: 108603-121130 bp Neighborhood of RT #1 [108603, 121318] COG3464 COG3464 PRK12275 RVT_N RVT-GII GIIM McrA PRK02259 LysR PLN02629 RVT_N RVT-GII RVT_N RVT-GII GIIM HNHc RVT-GII McrA TPR TPR TPR TPR TPR TPR Feature: gene Location: 108603-109580 bp Feature: domain Description: COG3464 Location: 108606-109158 bp Feature: domain Description: COG3 464 Location: 108606-109158 bp Feature: domain Description: COG3464 Location: 109188-109554 bp Feature: domain Description: COG3 464 Location: 109188-109554 bp Feature: gene Location: 109513-109740 bp Ori: QLE53751.1 Feature: domain Description: PRK12275 Location: 109573-109735 bp Feature: domain Description: PRK12275 Location: 109573 -10973 5 bp Feature: gene Location: 110457-112259 bp Ori: QLE53752.1 Gene: ltrA Feature: domain Description: RVT_N Location: 110529-110775 bp Feature: domain Description: RVT_N Location: 110529-110775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110817-111510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110817-111510 bp Feature: domain Description: GIIM Note: maturase Location: 111612-111843 bp Feature: domain Description: GIIM Note: maturase Location: 111612-111843 bp Feature: domain Description: McrA Location: 111906-112200 bp Feature: domain Description: McrA Location: 111906-112200 bp Feature: gene Location: 112572-113447 bp Ori: QLE53753.1 Feature: domain Description: PRK02259 Location: 112590-113436 bp Feature: domain Description: PRK02259 Location: 112590-113 43 6 bp Feature: gene Location: 113565-114353 bp Ori: QLE53754.1 Feature: domain Description: LysR Location: 113595-114300 bp Feature: domain Description: LysR Location: 113 595-1143 00 bp Feature: gene Location: 114331-114570 bp Ori: QLE53755.1 Feature: domain Description: PLN02629 Location: 114346-114562 bp Feature: domain Description: PLN02629 Location: 1143 46-114562 bp Feature: gene Location: 115352-115912 bp Feature: domain Description: RVT_N Location: 115385-115631 bp Feature: domain Description: RVT_N Location: 1153 85-11563 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115682-115913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115682-115913 bp Feature: gene Location: 116622-118101 bp Gene: ltrA Feature: domain Description: RVT_N Location: 116670-116913 bp Feature: domain Description: RVT_N Location: 116670-116913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116961-117639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116961-11763 9 bp Feature: domain Description: GIIM Note: maturase Location: 117696-117924 bp Feature: domain Description: GIIM Note: maturase Location: 117696-117924 bp Feature: gene Location: 118109-118333 bp Ori: QLE53756.1 Feature: domain Description: HNHc Note: nucleases Location: 118169-118310 bp Feature: domain Description: HNHc Note: nucleases Location: 118169-1183 10 bp Feature: gene Location: 118419-119432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118425-118848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118425-118848 bp Feature: domain Description: McrA Location: 119085-119409 bp Feature: domain Description: McrA Location: 119085-119409 bp Feature: gene Location: 119645-119977 bp Feature: gene Location: 120359-121318 bp Ori: QLE53758.1 Feature: domain Description: TPR Location: 120539-120620 bp Feature: domain Description: TPR Location: 12053 9-120620 bp Feature: domain Description: TPR Location: 120623-120722 bp Feature: domain Description: TPR Location: 120623 -120722 bp Feature: domain Description: TPR Location: 120728-120824 bp Feature: domain Description: TPR Location: 120728-120824 bp Feature: domain Description: TPR Location: 120836-120917 bp Feature: domain Description: TPR Location: 12083 6-120917 bp Feature: domain Description: TPR Location: 120941-121031 bp Feature: domain Description: TPR Location: 120941-12103 1 bp Feature: domain Description: TPR Location: 121037-121130 bp Feature: domain Description: TPR Location: 12103 7-12113 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), PRK12275 (hypothetical protein; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK02259 (aspartoacylase; Provisional), LysR (COG0583), PLN02629 (powdery mildew resistance 5), HNHc (smart00507)
TPR (smart00028)