myRT

myRT report for GCA_013393945.1_ASM1339394v1

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Seq: CP040299.1 Nostoc sp. TCL26-01 plasmid pTCL26-01_B, complete sequence (143905 bp)
Overview 1 RT 1: 33126-37439 bp Neighborhood of RT #1 [33126, 37439] cas1 DDE_Tnp_1 RVT-CRISPR Feature: gene Location: 33126-34130 bp Ori: QLE59844.1 Gene: cas1 Feature: domain Description: cas1 Location: 33135-34101 bp Feature: domain Description: cas1 Location: 331 35-341 01 bp Feature: gene Location: 34317-35624 bp Ori: QLE59768.1 Feature: domain Description: DDE_Tnp_1 Location: 34755-35370 bp Feature: domain Description: DDE_Tnp_1 Location: 34755-35370 bp Feature: gene Location: 35904-36515 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 35916-36453 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3591 6-36453 bp Feature: gene Location: 37439-37595 bp Feature: gene Location: 36526-37439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas1 (TIGR00287), DDE_Tnp_1 (pfam01609), RVT-CRISPR

Seq: CP040297.1 Nostoc sp. TCL26-01 chromosome, complete genome (6765102 bp)
Overview 1 RT 1: 3065125-3070542 bp 2 RT 2: 3433944-3439365 bp 3 RT 3: 4082958-4086731 bp 4 RT 4: 4361300-4368262 bp 5 RT 5: 5962662-5967751 bp Neighborhood of RT #1 [3065125, 3070580] TIGR03985 M48B_HtpX_like RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [3433944, 3439365] DarT Macro_Poa1p_like YwgA RVT-CRISPR-like Ferritin_like Neighborhood of RT #3 [4082958, 4086731] DUF2887 RVT_N RVT-GII GIIM McrA YadD Neighborhood of RT #4 [4361300, 4368291] TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 TPR_10 CHAT HTH_XRE DUF4384 RVT-CRISPR cas1 Neighborhood of RT #5 [5962662, 5967786] MdlB YadD RVT_N RVT-GII GIIM McrA DUF2887 Feature: gene Location: 3065125-3066597 bp Ori: QLE56389.1 Feature: domain Description: TIGR03985 Location: 3065854-3066589 bp Feature: domain Description: TIGR03985 Location: 3065854-3066589 bp Feature: gene Location: 3066817-3067851 bp Ori: QLE56390.1 Feature: domain Description: M48B_HtpX_like Location: 3066988-3067828 bp Feature: domain Description: M48B_HtpX_like Location: 3066988-306782 8 bp Feature: gene Location: 3067994-3068929 bp Ori: QLE56391.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3068201-3068807 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 30682 01-3068807 bp Feature: gene Location: 3069136-3070140 bp Ori: QLE59367.1 Gene: cas1 Feature: domain Description: Cas1_I-II-III Location: 3069148-3070102 bp Feature: domain Description: Cas1_I-II-III Location: 3069148-3070102 bp Feature: gene Location: 3070305-3070580 bp Ori: QLE56392.1 Gene: cas2 Feature: domain Description: Cas2_I_II_III Location: 3070314-3070542 bp Feature: domain Description: Cas2 _I_II_III Location: 3070314-3070542 bp Feature: gene Location: 3433944-3434567 bp Ori: QLE56652.1 Feature: domain Description: DarT Location: 3433962-3434565 bp Feature: domain Description: DarT Location: 3433962 -3434565 bp Feature: gene Location: 3434634-3435698 bp Ori: QLE56653.1 Feature: domain Description: Macro_Poa1p_like Location: 3434637-3435048 bp Feature: domain Description: Macro_Poa1p_like Location: 3434637-3435048 bp Feature: domain Description: YwgA Location: 3435195-3435357 bp Feature: domain Description: YwgA Location: 3435195-3435357 bp Feature: gene Location: 3435676-3437196 bp Ori: QLE56654.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3435925-3436645 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 343592 5-3436645 bp Feature: gene Location: 3437949-3438833 bp Ori: QLE56655.1 Feature: domain Description: Ferritin_like Location: 3438087-3438489 bp Feature: domain Description: Ferritin_like Location: 3438087-3438489 bp Feature: gene Location: 3439132-3439365 bp Feature: gene Location: 4082958-4083206 bp Ori: QLE57220.1 Feature: domain Description: DUF2887 Location: 4082967-4083171 bp Feature: domain Description: DUF2 887 Location: 4082 967-4083171 bp Feature: gene Location: 4083248-4083457 bp Feature: gene Location: 4083752-4085386 bp Ori: QLE57222.1 Feature: domain Description: RVT_N Location: 4083788-4084028 bp Feature: domain Description: RVT_N Location: 4083788-408402 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084079-4084736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084079-4084736 bp Feature: domain Description: GIIM Note: maturase Location: 4084793-4084973 bp Feature: domain Description: GIIM Note: maturase Location: 4084793-4084973 bp Feature: domain Description: McrA Location: 4085000-4085342 bp Feature: domain Description: McrA Location: 4085000-4085342 bp Feature: gene Location: 4085516-4086160 bp Feature: domain Description: YadD Location: 4085522-4086155 bp Feature: domain Description: YadD Location: 408552 2 -4086155 bp Feature: gene Location: 4086321-4086731 bp Feature: gene Location: 4361300-4365124 bp Ori: QLE57421.1 Feature: domain Description: TPR_10 Location: 4361456-4361570 bp Feature: domain Description: TPR_10 Location: 4361456-4361570 bp Feature: domain Description: TPR_10 Location: 4361573-4361672 bp Feature: domain Description: TPR_10 Location: 4361573-4361672 bp Feature: domain Description: TPR_10 Location: 4361708-4361822 bp Feature: domain Description: TPR_10 Location: 4361708-436182 2 bp Feature: domain Description: TPR_10 Location: 4361828-4361948 bp Feature: domain Description: TPR_10 Location: 436182 8-4361948 bp Feature: domain Description: TPR_10 Location: 4361954-4362074 bp Feature: domain Description: TPR_10 Location: 4361954-4362 074 bp Feature: domain Description: TPR_10 Location: 4362080-4362200 bp Feature: domain Description: TPR_10 Location: 4362 080-4362 2 00 bp Feature: domain Description: TPR_10 Location: 4362206-4362326 bp Feature: domain Description: TPR_10 Location: 4362 2 06-4362 32 6 bp Feature: domain Description: TPR_10 Location: 4362332-4362431 bp Feature: domain Description: TPR_10 Location: 4362 332 -4362 431 bp Feature: domain Description: TPR_10 Location: 4362458-4362575 bp Feature: domain Description: TPR_10 Location: 4362 458-4362 575 bp Feature: domain Description: TPR_10 Location: 4362584-4362701 bp Feature: domain Description: TPR_10 Location: 4362 584-4362 701 bp Feature: domain Description: TPR_10 Location: 4362710-4362830 bp Feature: domain Description: TPR_10 Location: 4362 710-4362 830 bp Feature: domain Description: TPR_10 Location: 4362833-4362950 bp Feature: domain Description: TPR_10 Location: 4362 833-4362 950 bp Feature: domain Description: TPR_10 Location: 4362962-4363082 bp Feature: domain Description: TPR_10 Location: 4362 962 -4363082 bp Feature: domain Description: CHAT Location: 4363979-4365089 bp Feature: domain Description: CHAT Location: 4363979-4365089 bp Feature: gene Location: 4365288-4366055 bp Ori: QLE57422.1 Feature: domain Description: HTH_XRE Location: 4365330-4365492 bp Feature: domain Description: HTH_XRE Location: 4365330-4365492 bp Feature: domain Description: DUF4384 Location: 4365684-4365915 bp Feature: domain Description: DUF4384 Location: 4365684-4365915 bp Feature: gene Location: 4366282-4368291 bp Ori: QLE57423.1 Gene: cas1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4366474-4367080 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4366474-4367080 bp Feature: domain Description: cas1 Location: 4367296-4368262 bp Feature: domain Description: cas1 Location: 43672 96-43682 62 bp Feature: gene Location: 5962662-5964431 bp Ori: QLE58591.1 Feature: domain Description: MdlB Location: 5962683-5964426 bp Feature: domain Description: MdlB Location: 5962 683-596442 6 bp Feature: gene Location: 5964572-5965222 bp Ori: QLE58592.1 Feature: domain Description: YadD Location: 5964575-5965211 bp Feature: domain Description: YadD Location: 5964575-59652 11 bp Feature: gene Location: 5965358-5966992 bp Ori: QLE58593.1 Feature: domain Description: RVT_N Location: 5965394-5965634 bp Feature: domain Description: RVT_N Location: 5965394-5965634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5965685-5966342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5965685-5966342 bp Feature: domain Description: GIIM Note: maturase Location: 5966399-5966579 bp Feature: domain Description: GIIM Note: maturase Location: 5966399-5966579 bp Feature: domain Description: McrA Location: 5966606-5966948 bp Feature: domain Description: McrA Location: 5966606-5966948 bp Feature: gene Location: 5967287-5967496 bp Feature: gene Location: 5967538-5967786 bp Ori: QLE58595.1 Feature: domain Description: DUF2887 Location: 5967547-5967751 bp Feature: domain Description: DUF2 887 Location: 5967547-5967751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR03985 (CRISPR-associated protein, TIGR03985 family), M48B_HtpX_like (cd07339), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), DarT, Macro_Poa1p_like, YwgA (COG3465), Ferritin_like (cl00264), DUF2887 (pfam11103)
RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), YadD (COG5464), TPR_10 (pfam13374), CHAT (pfam12770), HTH_XRE (smart00530), DUF4384 (pfam14326), cas1 (TIGR00287)
MdlB (COG1132)