myRT

myRT report for GCA_013394515.1_ASM1339451v1

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Seq: CP049278.1 Shigella boydii strain 600690 chromosome, complete genome (4820649 bp)
Overview 1 RT 1: 849681-854578 bp Neighborhood of RT #1 [849681, 854580] Caudo_TAP SR_ResInv RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 849681-850103 bp Ori: QNC65708.1 Feature: domain Description: Caudo_TAP Location: 849735-850092 bp Feature: domain Description: Caudo_TAP Location: 849735-850092 bp Feature: gene Location: 850161-850364 bp Feature: domain Description: SR_ResInv Location: 850173-850284 bp Feature: domain Description: SR_ResInv Location: 8501 73-850284 bp Feature: gene Location: 850548-852152 bp Ori: QNC65709.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 850839-851430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 850839-851 430 bp Feature: domain Description: TIR_2 Location: 851757-852045 bp Feature: domain Description: TIR_2 Location: 851 757-852045 bp Feature: gene Location: 852514-852774 bp Ori: QNC64441.1 Feature: domain Description: PRK10597 Location: 852517-852757 bp Feature: domain Description: PRK1 0597 Location: 85251 7-852757 bp Feature: gene Location: 852994-854580 bp Ori: QNC64442.1 Gene: prfC Feature: domain Description: prfC Location: 853012-854578 bp Feature: domain Description: prfC Location: 85301 2-854578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), SR_ResInv (cd03768), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: CP049279.1 Shigella boydii strain 600690 plasmid p600690_216, complete sequence (216073 bp)
Overview 1 RT 1: 5200-8002 bp 2 RT 2: 111307-115200 bp 3 RT 3: 208595-211903 bp Neighborhood of RT #1 [5200, 8251] InsE RVT-GII Y2_Tnp Neighborhood of RT #2 [111307, 115211] InsE DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66_C COG3547 Neighborhood of RT #3 [208595, 211905] HTH_Tnp_1 RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 5200-5887 bp Feature: domain Description: InsE Location: 5203-5446 bp Feature: domain Description: InsE Location: 52 03-5446 bp Feature: gene Location: 5889-6255 bp Feature: gene Location: 6183-6656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6426-6657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642 6-6657 bp Feature: gene Location: 7409-7774 bp Feature: gene Location: 7822-8251 bp Feature: domain Description: Y2_Tnp Location: 7831-8002 bp Feature: domain Description: Y2 _Tnp Location: 7831-8002 bp Feature: gene Location: 111307-112516 bp Feature: domain Description: InsE Location: 111310-111649 bp Feature: domain Description: InsE Location: 111310-111649 bp Feature: gene Location: 112553-112723 bp Feature: domain Description: DDE_Tnp_IS66 Location: 112559-112715 bp Feature: domain Description: DDE_Tnp_IS66 Location: 112 559-112 715 bp Feature: gene Location: 113309-114437 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113405-114059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113405-114059 bp Feature: gene Location: 114520-114699 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 114565-114676 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 114565-114676 bp Feature: gene Location: 114729-115211 bp Feature: domain Description: COG3547 Location: 114747-115200 bp Feature: domain Description: COG3547 Location: 114747-1152 00 bp Feature: gene Location: 208595-208844 bp Ori: QNC65938.1 Feature: domain Description: HTH_Tnp_1 Location: 208604-208817 bp Feature: domain Description: HTH_Tnp_1 Location: 2 08604-2 08817 bp Feature: gene Location: 208844-209751 bp Feature: gene Location: 209795-211101 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210059-210716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 10059-2 10716 bp Feature: gene Location: 211278-211712 bp Ori: QNC66031.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 211311-211608 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 11311-2 11608 bp Feature: gene Location: 211786-211905 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 211828-211903 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 1182 8-2 11903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, Y2_Tnp (pfam04986), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), HTH_Tnp_1 (pfam01527), group_II_RT_mat (TIGR04416)