myRT

myRT report for GCA_013394535.1_ASM1339453v1

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Seq: CP049282.1 Shigella boydii strain 600657 plasmid p600657_208, complete sequence (208836 bp)
Overview 1 RT 1: 64280-67316 bp 2 RT 2: 171124-173702 bp 3 RT 3: 195099-198417 bp Neighborhood of RT #1 [64280, 68183] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 InsE Neighborhood of RT #2 [171124, 174176] Y2_Tnp RVT-GII InsE Neighborhood of RT #3 [195099, 198417] PAP2_acid_phosphatase Tra5 RVT-GII InsE Feature: gene Location: 64280-64762 bp Feature: domain Description: COG3547 Location: 64298-64751 bp Feature: domain Description: COG3547 Location: 64298-64751 bp Feature: gene Location: 64792-64971 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 64837-64948 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 64837-64948 bp Feature: gene Location: 65054-66232 bp Ori: QNC61765.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65201-65855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65201 -65855 bp Feature: domain Description: GIIM Note: maturase Location: 65933-66155 bp Feature: domain Description: GIIM Note: maturase Location: 65933-661 55 bp Feature: gene Location: 66758-66937 bp Feature: domain Description: DDE_Tnp_IS66 Location: 66764-66920 bp Feature: domain Description: DDE_Tnp_IS66 Location: 66764-66920 bp Feature: gene Location: 66974-68183 bp Feature: domain Description: InsE Location: 66977-67316 bp Feature: domain Description: InsE Location: 66977-6731 6 bp Feature: gene Location: 171124-171553 bp Feature: domain Description: Y2_Tnp Location: 171133-171304 bp Feature: domain Description: Y2_Tnp Location: 1 71 1 33-1 71 304 bp Feature: gene Location: 171601-171882 bp Feature: gene Location: 172720-173118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172891-173119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72891 -1 731 1 9 bp Feature: gene Location: 173121-173487 bp Feature: gene Location: 173489-174176 bp Feature: domain Description: InsE Location: 173492-173702 bp Feature: domain Description: InsE Location: 1 73492-1 73702 bp Feature: gene Location: 195099-195848 bp Ori: QNC61691.1 Feature: domain Description: PAP2_acid_phosphatase Location: 195174-195828 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 951 74-1 95828 bp Feature: gene Location: 196211-196444 bp Feature: domain Description: Tra5 Location: 196235-196427 bp Feature: domain Description: Tra5 Location: 1 96235-1 96427 bp Feature: gene Location: 196457-197149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196757-197150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96757-1 971 50 bp Feature: gene Location: 197204-197495 bp Ori: QNC61692.1 Feature: domain Description: InsE Location: 197207-197495 bp Feature: domain Description: InsE Location: 1 97207-1 97495 bp Feature: gene Location: 197495-198417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), Y2_Tnp (pfam04986), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801)