myRT

myRT report for GCA_013394555.1_ASM1339455v1

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Seq: CP049286.1 Shigella boydii strain 602068 plasmid p602068_185, complete sequence (185316 bp)
Overview 1 RT 1: 52090-54821 bp 2 RT 2: 136654-139457 bp Neighborhood of RT #1 [52090, 54832] COG4453 Acetyltransf_10 RVT-GII GIIM COG3547 Neighborhood of RT #2 [136654, 139706] InsE RVT-GII Y2_Tnp Feature: gene Location: 52090-52374 bp Ori: QNC53784.1 Feature: domain Description: COG4453 Location: 52114-52369 bp Feature: domain Description: COG4453 Location: 521 1 4-52369 bp Feature: gene Location: 52362-52847 bp Ori: QNC53785.1 Feature: domain Description: Acetyltransf_10 Location: 52497-52812 bp Feature: domain Description: Acetyltransf_1 0 Location: 52497-5281 2 bp Feature: gene Location: 52881-54059 bp Ori: QNC53786.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53028-53682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53028-53682 bp Feature: domain Description: GIIM Note: maturase Location: 53760-53982 bp Feature: domain Description: GIIM Note: maturase Location: 53760-53982 bp Feature: gene Location: 54142-54296 bp Feature: gene Location: 54350-54832 bp Feature: domain Description: COG3547 Location: 54368-54821 bp Feature: domain Description: COG3547 Location: 54368-54821 bp Feature: gene Location: 136654-137341 bp Feature: domain Description: InsE Location: 136657-136900 bp Feature: domain Description: InsE Location: 1 36657-1 36900 bp Feature: gene Location: 137343-137709 bp Feature: gene Location: 137637-138110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137880-138111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37880-1 381 1 1 bp Feature: gene Location: 138948-139229 bp Feature: gene Location: 139277-139706 bp Feature: domain Description: Y2_Tnp Location: 139286-139457 bp Feature: domain Description: Y2_Tnp Location: 1 39286-1 39457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4453 (Uncharacterized conserved protein, DUF1778 family ), Acetyltransf_10 (pfam13673), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), InsE (COG2963), Y2_Tnp (pfam04986)

Seq: CP049285.1 Shigella boydii strain 602068 chromosome, complete genome (4572715 bp)
Overview 1 RT 1: 488976-493811 bp Neighborhood of RT #1 [488976, 493811] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Feature: gene Location: 488976-489818 bp Ori: QNC53510.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 489075-489474 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 489075-489474 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 489483-489756 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 489483-489756 bp Feature: gene Location: 490004-490722 bp Feature: domain Description: InsE Location: 490043-490334 bp Feature: domain Description: InsE Location: 490043-490334 bp Feature: gene Location: 491395-492903 bp Ori: QNC53511.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491653-492385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491653-492 385 bp Feature: domain Description: GIIM Note: maturase Location: 492460-492658 bp Feature: domain Description: GIIM Note: maturase Location: 492 460-492 658 bp Feature: gene Location: 492984-493471 bp Feature: domain Description: PHA02517 Location: 492987-493158 bp Feature: domain Description: PHA02 517 Location: 492 987-493158 bp Feature: gene Location: 493554-493811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_Ecf1_like_5s (cd10969), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)