myRT

myRT report for GCA_013402835.1_ASM1340283v1

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Seq: CP058589.1 Shigella flexneri strain M2901 chromosome, complete genome (4682307 bp)
Overview 1 RT 1: 2043340-2047295 bp 2 RT 2: 2173332-2178709 bp 3 RT 3: 3155853-3164262 bp Neighborhood of RT #1 [2043340, 2047297] FlhE PHA02517 RVT-GII GIIM InsE FlhE Neighborhood of RT #2 [2173332, 2178732] InsE InsE RVT-GII GIIM PHA02517 DDE_Tnp_IS66_C Neighborhood of RT #3 [3155853, 3164327] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM InsE zinc_ribbon_11 Feature: gene Location: 2043340-2043408 bp Feature: domain Description: FlhE Location: 2043346-2043406 bp Feature: domain Description: FlhE Location: 2043346-2043406 bp Feature: gene Location: 2043442-2043907 bp Feature: domain Description: PHA02517 Location: 2043445-2043520 bp Feature: domain Description: PHA0251 7 Location: 2043445-2043520 bp Feature: gene Location: 2043991-2045499 bp Ori: QLG55028.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2044249-2044981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2044249-2044981 bp Feature: domain Description: GIIM Note: maturase Location: 2045056-2045254 bp Feature: domain Description: GIIM Note: maturase Location: 2045056-2045254 bp Feature: gene Location: 2046172-2046907 bp Feature: domain Description: InsE Location: 2046175-2046514 bp Feature: domain Description: InsE Location: 20461 75-204651 4 bp Feature: gene Location: 2046959-2047297 bp Ori: QLG55029.1 Feature: domain Description: FlhE Location: 2047043-2047295 bp Feature: domain Description: FlhE Location: 2047043-2047295 bp Feature: gene Location: 2173332-2174487 bp Feature: domain Description: InsE Location: 2173335-2173623 bp Feature: domain Description: InsE Location: 21 73335-21 73623 bp Feature: gene Location: 2174730-2175465 bp Feature: domain Description: InsE Location: 2174733-2175072 bp Feature: domain Description: InsE Location: 21 74733-21 75072 bp Feature: gene Location: 2176137-2177645 bp Ori: QLG55035.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176395-2177127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 76395-21 771 27 bp Feature: domain Description: GIIM Note: maturase Location: 2177202-2177400 bp Feature: domain Description: GIIM Note: maturase Location: 21 77202-21 77400 bp Feature: gene Location: 2177735-2178208 bp Feature: domain Description: PHA02517 Location: 2177741-2178206 bp Feature: domain Description: PHA0251 7 Location: 21 77741 -21 78206 bp Feature: gene Location: 2178586-2178732 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2178607-2178709 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 78607-21 78709 bp Feature: gene Location: 3155853-3159971 bp Ori: QLG53747.1 Gene: pic Feature: domain Description: Peptidase_S6 Location: 3156006-3158178 bp Feature: domain Description: Peptidase_S6 Location: 31 56006-31 581 78 bp Feature: domain Description: autotrans_barl Location: 3158742-3159969 bp Feature: domain Description: autotrans_barl Location: 31 58742-31 59969 bp Feature: gene Location: 3160136-3160609 bp Feature: domain Description: PHA02517 Location: 3160142-3160607 bp Feature: domain Description: PHA0251 7 Location: 31 601 42-31 60607 bp Feature: gene Location: 3160699-3162207 bp Ori: QLG55081.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3160957-3161689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 60957-31 61 689 bp Feature: domain Description: GIIM Note: maturase Location: 3161764-3161962 bp Feature: domain Description: GIIM Note: maturase Location: 31 61 764-31 61 962 bp Feature: gene Location: 3162880-3163619 bp Feature: domain Description: InsE Location: 3162883-3163222 bp Feature: domain Description: InsE Location: 31 62883-31 63222 bp Feature: gene Location: 3163902-3164327 bp Ori: QLG53748.1 Feature: domain Description: zinc_ribbon_11 Location: 3163944-3164262 bp Feature: domain Description: zinc_ribbon_1 1 Location: 31 63944-31 64262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlhE (pfam06366), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), DDE_Tnp_IS66_C (pfam13817), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), zinc_ribbon_11 (pfam11682)

Seq: CP058591.1 Shigella flexneri strain M2901 plasmid unnamed2, complete sequence (224303 bp)
Overview 1 RT 1: 46961-49995 bp 2 RT 2: 59064-61866 bp 3 RT 3: 152182-156396 bp 4 RT 4: 173080-176971 bp Neighborhood of RT #1 [46961, 49997] PAP2_acid_phosphatase Tra5 RVT-GII DDE_Tnp_IS66_C OrfB_IS605 Neighborhood of RT #2 [59064, 62115] InsE RVT-GII Y2_Tnp Neighborhood of RT #3 [152182, 156784] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM InsE Zn_Tnp_IS1 HTH_Tnp_IS1 Neighborhood of RT #4 [173080, 176982] InsE DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 46961-47710 bp Ori: QLG55282.1 Feature: domain Description: PAP2_acid_phosphatase Location: 47036-47690 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 47036-47690 bp Feature: gene Location: 48088-48306 bp Feature: domain Description: Tra5 Location: 48097-48289 bp Feature: domain Description: Tra5 Location: 48097-482 89 bp Feature: gene Location: 48571-49501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48619-49168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48619-49168 bp Feature: gene Location: 49575-49694 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 49617-49692 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 49617-49692 bp Feature: gene Location: 49827-49997 bp Feature: domain Description: OrfB_IS605 Location: 49833-49995 bp Feature: domain Description: OrfB_IS605 Location: 49833-49995 bp Feature: gene Location: 59064-59751 bp Feature: domain Description: InsE Location: 59067-59310 bp Feature: domain Description: InsE Location: 59067-59310 bp Feature: gene Location: 59753-60119 bp Feature: gene Location: 60047-60520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60293-60521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 602 93-6052 1 bp Feature: gene Location: 61273-61638 bp Feature: gene Location: 61686-62115 bp Feature: domain Description: Y2_Tnp Location: 61695-61866 bp Feature: domain Description: Y2 _Tnp Location: 61695-61866 bp Feature: gene Location: 152182-152592 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152185-152437 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152 185-152 437 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 152461-152569 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 152 461-152 569 bp Feature: gene Location: 152636-153115 bp Feature: domain Description: PHA02517 Location: 152639-153113 bp Feature: domain Description: PHA02 517 Location: 152 639-153113 bp Feature: gene Location: 153199-154707 bp Ori: QLG55385.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153457-154189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153457-154189 bp Feature: domain Description: GIIM Note: maturase Location: 154264-154462 bp Feature: domain Description: GIIM Note: maturase Location: 1542 64-154462 bp Feature: gene Location: 155380-156115 bp Feature: domain Description: InsE Location: 155383-155722 bp Feature: domain Description: InsE Location: 155383-15572 2 bp Feature: gene Location: 156141-156784 bp Feature: domain Description: Zn_Tnp_IS1 Location: 156144-156240 bp Feature: domain Description: Zn_Tnp_IS1 Location: 156144-1562 40 bp Feature: domain Description: HTH_Tnp_IS1 Location: 156261-156396 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1562 61-156396 bp Feature: gene Location: 173080-174289 bp Feature: domain Description: InsE Location: 173083-173422 bp Feature: domain Description: InsE Location: 173083-17342 2 bp Feature: gene Location: 174326-174505 bp Feature: domain Description: DDE_Tnp_IS66 Location: 174332-174488 bp Feature: domain Description: DDE_Tnp_IS66 Location: 174332 -174488 bp Feature: gene Location: 175030-176208 bp Ori: QLG55352.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175177-175831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175177-175831 bp Feature: domain Description: GIIM Note: maturase Location: 175909-176131 bp Feature: domain Description: GIIM Note: maturase Location: 175909-176131 bp Feature: gene Location: 176291-176470 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 176336-176447 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 176336-176447 bp Feature: gene Location: 176500-176982 bp Feature: domain Description: COG3547 Location: 176518-176971 bp Feature: domain Description: COG3547 Location: 176518-176971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, DDE_Tnp_IS66_C (pfam13817), OrfB_IS605 (pfam01385), InsE (COG2963), Y2_Tnp (pfam04986), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388)
Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), COG3547 (Transposase )