myRT

myRT report for GCA_013402895.1_ASM1340289v1

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Seq: CP058574.1 Escherichia coli strain EC1 chromosome, complete genome (5078198 bp)
Overview 1 RT 1: 804309-820842 bp 2 RT 2: 1836958-1841397 bp 3 RT 3: 3877691-3881903 bp 4 RT 4: 3941659-3948127 bp 5 RT 5: 3957306-3962902 bp 6 RT 6: 4409194-4412916 bp Neighborhood of RT #1 [804309, 820842] PHA02517 RVT-GII GIIM InsE InsE RVT-GII GIIM PHA02517 FaeA FimA PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [1836958, 1841405] HTH_XRE RVT-Retrons Q Neighborhood of RT #3 [3877691, 3881911] PRK11433 PHA02517 RVT-GII GIIM InsE PRK11433 Neighborhood of RT #4 [3941659, 3948219] FlhA InsE RVT-GII GIIM PHA02517 RAYT Neighborhood of RT #5 [3957306, 3962902] YhhI YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Neighborhood of RT #6 [4409194, 4412915] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 804309-804530 bp Feature: gene Location: 804496-804969 bp Feature: domain Description: PHA02517 Location: 804502-804967 bp Feature: domain Description: PHA0251 7 Location: 804502-804967 bp Feature: gene Location: 805059-806567 bp Ori: QLG68784.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805317-806049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80531 7-806049 bp Feature: domain Description: GIIM Note: maturase Location: 806124-806322 bp Feature: domain Description: GIIM Note: maturase Location: 8061 24-806322 bp Feature: gene Location: 807240-807972 bp Feature: gene Location: 808383-809596 bp Feature: domain Description: InsE Location: 808386-808725 bp Feature: domain Description: InsE Location: 808386-808725 bp Feature: gene Location: 810737-811633 bp Feature: gene Location: 811639-812378 bp Feature: domain Description: InsE Location: 811642-811981 bp Feature: domain Description: InsE Location: 81 1 642-81 1 981 bp Feature: gene Location: 813051-814559 bp Ori: QLG68785.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813309-814041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 3309-81 4041 bp Feature: domain Description: GIIM Note: maturase Location: 814116-814314 bp Feature: domain Description: GIIM Note: maturase Location: 81 41 1 6-81 431 4 bp Feature: gene Location: 814640-815128 bp Feature: domain Description: PHA02517 Location: 814643-815093 bp Feature: domain Description: PHA0251 7 Location: 81 4643-81 5093 bp Feature: gene Location: 815329-815550 bp Ori: QLG68786.1 Feature: domain Description: FaeA Location: 815332-815509 bp Feature: domain Description: FaeA Location: 81 5332-81 5509 bp Feature: gene Location: 816488-816940 bp Gene: papA Feature: domain Description: FimA Location: 816494-816914 bp Feature: domain Description: FimA Location: 81 6494-81 691 4 bp Feature: gene Location: 816982-817455 bp Feature: domain Description: PHA02517 Location: 816988-817453 bp Feature: domain Description: PHA0251 7 Location: 81 6988-81 7453 bp Feature: gene Location: 817545-819053 bp Ori: QLG68787.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817803-818535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 7803-81 8535 bp Feature: domain Description: GIIM Note: maturase Location: 818610-818808 bp Feature: domain Description: GIIM Note: maturase Location: 81 861 0-81 8808 bp Feature: gene Location: 819726-820465 bp Feature: domain Description: InsE Location: 819729-820068 bp Feature: domain Description: InsE Location: 81 9729-820068 bp Feature: gene Location: 820699-820842 bp Feature: gene Location: 1836958-1837113 bp Feature: gene Location: 1837150-1837470 bp Ori: QLG65960.1 Feature: domain Description: HTH_XRE Location: 1837165-1837324 bp Feature: domain Description: HTH_XRE Location: 1 8371 65-1 837324 bp Feature: gene Location: 1837436-1838386 bp Ori: QLG65961.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1837616-1838159 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 83761 6-1 8381 59 bp Feature: gene Location: 1838495-1839858 bp Feature: gene Location: 1840371-1841405 bp Ori: QLG65962.1 Feature: domain Description: Q Location: 1840374-1841397 bp Feature: domain Description: Q Location: 1 840374-1 841 397 bp Feature: gene Location: 3877691-3877930 bp Ori: QLG67768.1 Feature: domain Description: PRK11433 Location: 3877730-3877901 bp Feature: domain Description: PRK1 1 433 Location: 3877730-3877901 bp Feature: gene Location: 3877900-3878388 bp Feature: domain Description: PHA02517 Location: 3877903-3878359 bp Feature: domain Description: PHA0251 7 Location: 3877903-3878359 bp Feature: gene Location: 3878469-3879977 bp Ori: QLG68917.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3878727-3879459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3878727-3879459 bp Feature: domain Description: GIIM Note: maturase Location: 3879534-3879732 bp Feature: domain Description: GIIM Note: maturase Location: 3879534-3879732 bp Feature: gene Location: 3880650-3881383 bp Feature: domain Description: InsE Location: 3880689-3880983 bp Feature: domain Description: InsE Location: 3880689-3880983 bp Feature: gene Location: 3881420-3881911 bp Gene: paoA Feature: domain Description: PRK11433 Location: 3881423-3881903 bp Feature: domain Description: PRK1 1 433 Location: 3881 423-3881 903 bp Feature: gene Location: 3941659-3943752 bp Ori: QLG67829.1 Gene: flhA Feature: domain Description: FlhA Location: 3941671-3943747 bp Feature: domain Description: FlhA Location: 3941 671 -3943747 bp Feature: gene Location: 3944080-3944813 bp Feature: domain Description: InsE Location: 3944119-3944413 bp Feature: domain Description: InsE Location: 39441 1 9-394441 3 bp Feature: gene Location: 3945486-3946994 bp Ori: QLG68921.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945744-3946476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3945744-3946476 bp Feature: domain Description: GIIM Note: maturase Location: 3946551-3946749 bp Feature: domain Description: GIIM Note: maturase Location: 3946551 -3946749 bp Feature: gene Location: 3947075-3947563 bp Feature: domain Description: PHA02517 Location: 3947078-3947534 bp Feature: domain Description: PHA0251 7 Location: 3947078-3947534 bp Feature: gene Location: 3947722-3948219 bp Ori: QLG67830.1 Gene: rayT Feature: domain Description: RAYT Location: 3947725-3948127 bp Feature: domain Description: RAYT Location: 3947725-39481 27 bp Feature: gene Location: 3957306-3958442 bp Ori: QLG67840.1 Feature: domain Description: YhhI Location: 3957309-3957672 bp Feature: domain Description: YhhI Location: 3957309-3957672 bp Feature: domain Description: YhhI Location: 3957729-3958083 bp Feature: domain Description: YhhI Location: 3957729-3958083 bp Feature: domain Description: YhhI Location: 3958101-3958344 bp Feature: domain Description: YhhI Location: 39581 01 -3958344 bp Feature: gene Location: 3958618-3958812 bp Feature: domain Description: YhhI Location: 3958627-3958798 bp Feature: domain Description: YhhI Location: 3958627-3958798 bp Feature: gene Location: 3958889-3960139 bp Ori: QLG67841.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959093-3959750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3959093-3959750 bp Feature: domain Description: GIIM Note: maturase Location: 3959831-3960053 bp Feature: domain Description: GIIM Note: maturase Location: 3959831 -3960053 bp Feature: gene Location: 3960671-3961627 bp Ori: QLG67842.1 Feature: domain Description: YhhI Location: 3960674-3961019 bp Feature: domain Description: YhhI Location: 3960674-3961 01 9 bp Feature: domain Description: YhhI Location: 3961076-3961430 bp Feature: domain Description: YhhI Location: 3961 076-3961 430 bp Feature: domain Description: YhhI Location: 3961430-3961610 bp Feature: domain Description: YhhI Location: 3961 430-3961 61 0 bp Feature: gene Location: 3961940-3962902 bp Feature: gene Location: 4409194-4409451 bp Feature: gene Location: 4409534-4410021 bp Feature: domain Description: PHA02517 Location: 4409537-4409708 bp Feature: domain Description: PHA0251 7 Location: 4409537-4409708 bp Feature: gene Location: 4410102-4411610 bp Ori: QLG68942.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4410360-4411092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 0360-441 1 092 bp Feature: domain Description: GIIM Note: maturase Location: 4411167-4411365 bp Feature: domain Description: GIIM Note: maturase Location: 441 1 1 67-441 1 365 bp Feature: gene Location: 4412283-4412588 bp Feature: domain Description: PHA02517 Location: 4412286-4412589 bp Feature: domain Description: PHA0251 7 Location: 441 2286-441 2589 bp Feature: gene Location: 4412655-4412915 bp Feature: domain Description: InsE Location: 4412658-4412916 bp Feature: domain Description: InsE Location: 441 2658-441 291 6 bp 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Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), FaeA (pfam04703), FimA (pfam16970), HTH_XRE (smart00530), RVT-Retrons, Q (PHA02536), PRK11433 (aldehyde oxidoreductase 2Fe-2S subunit; Provisional)
FlhA (TIGR01398), RAYT (COG1943), YhhI (COG5433)