myRT

myRT report for GCA_013403585.1_ASM1340358v1

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Seq: CP058644.1 Pseudomonas yamanorum strain GZD14026 chromosome, complete genome (6943411 bp)
Overview 1 RT 1: 1671707-1678290 bp 2 RT 2: 5096996-5101615 bp 3 RT 3: 5106448-5111817 bp Neighborhood of RT #1 [1671707, 1678304] PtrB RVT_N RVT-GII GIIM HNHc GATase_4 Neighborhood of RT #2 [5096996, 5101618] conj_conj_conj_TIGR03747 KOG2108 RVT_N RVT-GII GIIM Tra8 HTH_Tnp_1 Neighborhood of RT #3 [5106448, 5111828] RhtA VOC_like RVT_N RVT-GII GIIM PRK09413 TcpQ Feature: gene Location: 1671707-1671985 bp Feature: gene Location: 1672017-1674071 bp Ori: QLG91854.1 Feature: domain Description: PtrB Location: 1672056-1674060 bp Feature: domain Description: PtrB Location: 1 672056-1 674060 bp Feature: gene Location: 1675221-1676927 bp Ori: QLG91855.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1675278-1675518 bp Feature: domain Description: RVT_N Location: 1 675278-1 67551 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1675566-1676202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 675566-1 676202 bp Feature: domain Description: GIIM Note: maturase Location: 1676259-1676487 bp Feature: domain Description: GIIM Note: maturase Location: 1 676259-1 676487 bp Feature: domain Description: HNHc Note: nucleases Location: 1676706-1676871 bp Feature: domain Description: HNHc Note: nucleases Location: 1 676706-1 676871 bp Feature: gene Location: 1677015-1677497 bp Feature: gene Location: 1677528-1678304 bp Ori: QLG91857.1 Feature: domain Description: GATase_4 Location: 1677531-1678290 bp Feature: domain Description: GATase_4 Location: 1 677531 -1 678290 bp Feature: gene Location: 5096996-5097751 bp Ori: QLG94714.1 Feature: domain Description: conj_conj_conj_TIGR03747 Location: 5097050-5097749 bp Feature: domain Description: conj_conj_conj_TIGR03747 Location: 5097050-5097749 bp Feature: gene Location: 5097760-5098392 bp Feature: domain Description: KOG2108 Location: 5097814-5098390 bp Feature: domain Description: KOG21 08 Location: 509781 4-5098390 bp Feature: gene Location: 5099025-5100509 bp Ori: QLG94715.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5099100-5099340 bp Feature: domain Description: RVT_N Location: 50991 00-5099340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5099388-5100030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5099388-51 00030 bp Feature: domain Description: GIIM Note: maturase Location: 5100084-5100315 bp Feature: domain Description: GIIM Note: maturase Location: 51 00084-51 0031 5 bp Feature: gene Location: 5100862-5101296 bp Feature: domain Description: Tra8 Location: 5100871-5101294 bp Feature: domain Description: Tra8 Location: 51 00871 -51 01 294 bp Feature: gene Location: 5101360-5101618 bp Ori: QLG94716.1 Feature: domain Description: HTH_Tnp_1 Location: 5101393-5101615 bp Feature: domain Description: HTH_Tnp_1 Location: 51 01 393-51 01 61 5 bp Feature: gene Location: 5106448-5107323 bp Ori: QLG94720.1 Feature: domain Description: RhtA Location: 5106487-5107315 bp Feature: domain Description: RhtA Location: 51 06487-51 0731 5 bp Feature: gene Location: 5107342-5107761 bp Ori: QLG94721.1 Feature: domain Description: VOC_like Location: 5107348-5107738 bp Feature: domain Description: VOC_like Location: 51 07348-51 07738 bp Feature: gene Location: 5108079-5109563 bp Ori: QLG94722.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5108154-5108394 bp Feature: domain Description: RVT_N Location: 51 081 54-51 08394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5108442-5109084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 08442-51 09084 bp Feature: domain Description: GIIM Note: maturase Location: 5109138-5109369 bp Feature: domain Description: GIIM Note: maturase Location: 51 091 38-51 09369 bp Feature: gene Location: 5110175-5111391 bp Feature: domain Description: PRK09413 Location: 5110208-5110556 bp Feature: domain Description: PRK0941 3 Location: 51 1 0208-51 1 0556 bp Feature: gene Location: 5111424-5111828 bp Feature: domain Description: TcpQ Location: 5111583-5111817 bp Feature: domain Description: TcpQ Location: 51 1 1 583-51 1 1 81 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PtrB (COG1770), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), GATase_4 (pfam13230), conj_conj_conj_TIGR03747, KOG2108 (KOG2108, 3'-5' DNA helicase ), Tra8 (COG2826), HTH_Tnp_1 (pfam01527)
RhtA (COG5006), VOC_like (cd16355), PRK09413 (IS2 repressor TnpA; Reviewed), TcpQ (pfam10671)