myRT

myRT report for GCA_013416035.1_ASM1341603v1

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Seq: CP049716.1 Klebsiella pneumoniae strain 11KM256 chromosome, complete genome (5406746 bp)
Overview 1 RT 1: 1299924-1302999 bp 2 RT 2: 3042401-3046052 bp 3 RT 3: 3122555-3127656 bp 4 RT 4: 3307630-3312994 bp 5 RT 5: 3644337-3648491 bp Neighborhood of RT #1 [1299924, 1303004] PRK09678 RVT-Retrons SmpB PRK10724 Neighborhood of RT #2 [3042401, 3046108] PRK10597 RVT-GII Laminin_G_3 Neighborhood of RT #3 [3122555, 3127664] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #4 [3307630, 3313047] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3644337, 3648511] DinI RVT-GII int YbjK Feature: gene Location: 1299924-1300142 bp Ori: QLI11274.1 Feature: domain Description: PRK09678 Location: 1299927-1300125 bp Feature: domain Description: PRK09678 Location: 1 299927-1 3001 25 bp Feature: gene Location: 1300404-1300577 bp Feature: gene Location: 1300546-1301319 bp Ori: QLI07495.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1300606-1301143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 300606-1 301 1 43 bp Feature: gene Location: 1301935-1302417 bp Ori: QLI07496.1 Gene: smpB Feature: domain Description: SmpB Location: 1301965-1302409 bp Feature: domain Description: SmpB Location: 1 301 965-1 302409 bp Feature: gene Location: 1302528-1303004 bp Ori: QLI07497.1 Feature: domain Description: PRK10724 Location: 1302534-1302999 bp Feature: domain Description: PRK1 0724 Location: 1 302534-1 302999 bp Feature: gene Location: 3042401-3042649 bp Ori: QLI09055.1 Feature: domain Description: PRK10597 Location: 3042404-3042644 bp Feature: domain Description: PRK1 0597 Location: 3042404-3042644 bp Feature: gene Location: 3042872-3043156 bp Feature: gene Location: 3043234-3044721 bp Ori: QLI09057.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3043639-3044329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3043639-3044329 bp Feature: gene Location: 3045171-3045380 bp Feature: gene Location: 3045377-3046108 bp Ori: QLI09059.1 Feature: domain Description: Laminin_G_3 Location: 3045713-3046052 bp Feature: domain Description: Laminin_G_3 Location: 304571 3-3046052 bp Feature: gene Location: 3122555-3123820 bp Ori: QLI09142.1 Feature: domain Description: umuC Location: 3122558-3123818 bp Feature: domain Description: umuC Location: 31 22558-31 2381 8 bp Feature: gene Location: 3123822-3124241 bp Ori: QLI11388.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3123825-3124236 bp Feature: domain Description: PRK1 0276 Location: 31 23825-31 24236 bp Feature: gene Location: 3124321-3125808 bp Ori: QLI09143.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3124726-3125416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 24726-31 2541 6 bp Feature: gene Location: 3126703-3127125 bp Ori: QLI09144.1 Feature: domain Description: XerC Location: 3126739-3127084 bp Feature: domain Description: XerC Location: 31 26739-31 27084 bp Feature: gene Location: 3127203-3127664 bp Feature: domain Description: PinE Location: 3127206-3127656 bp Feature: domain Description: PinE Location: 31 27206-31 27656 bp Feature: gene Location: 3307630-3308895 bp Ori: QLI09327.1 Feature: domain Description: umuC Location: 3307633-3308893 bp Feature: domain Description: umuC Location: 3307633-3308893 bp Feature: gene Location: 3308898-3309317 bp Ori: QLI09328.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3308901-3309312 bp Feature: domain Description: PRK1 0276 Location: 3308901 -330931 2 bp Feature: gene Location: 3309396-3310883 bp Ori: QLI09329.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3309801-3310491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3309801 -331 0491 bp Feature: gene Location: 3311498-3311740 bp Ori: QLI09330.1 Feature: domain Description: DinI Location: 3311549-3311729 bp Feature: domain Description: DinI Location: 331 1 549-331 1 729 bp Feature: gene Location: 3311911-3313047 bp Ori: QLI11398.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3312091-3312994 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 331 2091 -331 2994 bp Feature: gene Location: 3644337-3644570 bp Ori: QLI09640.1 Feature: domain Description: DinI Location: 3644379-3644565 bp Feature: domain Description: DinI Location: 3644379-3644565 bp Feature: gene Location: 3644581-3644769 bp Feature: gene Location: 3644870-3646357 bp Ori: QLI09641.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3645275-3645965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3645275-3645965 bp Feature: gene Location: 3646845-3647825 bp Ori: QLI11416.1 Feature: domain Description: int Location: 3646848-3647775 bp Feature: domain Description: int Location: 3646848-3647775 bp Feature: gene Location: 3647948-3648511 bp Ori: QLI09642.1 Feature: domain Description: YbjK Location: 3647954-3648491 bp Feature: domain Description: YbjK Location: 3647954-3648491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-GII, Laminin_G_3 (pfam13385), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), XerC (COG4973)
PinE (COG1961), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), int (PHA02601), YbjK (COG3226)

Seq: CP049717.1 Klebsiella pneumoniae strain 11KM256 plasmid pMBR_F, complete sequence (190737 bp)
Overview 1 RT 1: 179901-184892 bp Neighborhood of RT #1 [179901, 184897] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 179901-180326 bp Ori: QLI11651.1 Feature: domain Description: Antirestrict Location: 180036-180324 bp Feature: domain Description: Antirestrict Location: 180036-18032 4 bp Feature: gene Location: 180847-181077 bp Feature: gene Location: 181311-182798 bp Ori: QLI11653.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181716-182406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181716-182 406 bp Feature: gene Location: 183201-183626 bp Ori: QLI11654.1 Gene: umuD Feature: domain Description: PRK10276 Location: 183204-183612 bp Feature: domain Description: PRK102 76 Location: 1832 04-183612 bp Feature: gene Location: 183626-184897 bp Ori: QLI11655.1 Feature: domain Description: umuC Location: 183629-184892 bp Feature: domain Description: umuC Location: 18362 9-184892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP049718.1 Klebsiella pneumoniae strain 11KM256 plasmid pMBR_DHA-1_1CO, complete sequence (55778 bp)
Overview 1 RT 1: 8928-12084 bp Neighborhood of RT #1 [8928, 12101] Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 8928-9625 bp Feature: domain Description: Zn_Tnp_IS1 Location: 8934-9036 bp Feature: domain Description: Zn_Tnp_IS1 Location: 893 4-903 6 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9057-9189 bp Feature: domain Description: HTH_Tnp_IS1 Location: 9057-9189 bp Feature: gene Location: 9659-9784 bp Feature: gene Location: 9777-11264 bp Ori: QLI11682.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10182-10872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10182-10872 bp Feature: gene Location: 11577-11692 bp Feature: gene Location: 11670-12101 bp Ori: QLI11683.1 Gene: umuD Feature: domain Description: PRK10276 Location: 11721-12084 bp Feature: domain Description: PRK10276 Location: 11721-12084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)