myRT

myRT report for GCA_013416055.1_ASM1341605v1

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Seq: CP049719.1 Klebsiella pneumoniae strain 06KM907 chromosome, complete genome (5405574 bp)
Overview 1 RT 1: 1298755-1301830 bp 2 RT 2: 3041232-3044883 bp 3 RT 3: 3121386-3126487 bp 4 RT 4: 3306461-3311825 bp 5 RT 5: 3643168-3647322 bp Neighborhood of RT #1 [1298755, 1301835] PRK09678 RVT-Retrons SmpB PRK10724 Neighborhood of RT #2 [3041232, 3044939] PRK10597 RVT-GII Laminin_G_3 Neighborhood of RT #3 [3121386, 3126495] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #4 [3306461, 3311878] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3643168, 3647342] DinI RVT-GII int YbjK Feature: gene Location: 1298755-1298973 bp Ori: QLI16773.1 Feature: domain Description: PRK09678 Location: 1298758-1298956 bp Feature: domain Description: PRK09678 Location: 1 298758-1 298956 bp Feature: gene Location: 1299235-1299408 bp Feature: gene Location: 1299377-1300150 bp Ori: QLI12989.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1299437-1299974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 299437-1 299974 bp Feature: gene Location: 1300766-1301248 bp Ori: QLI12990.1 Gene: smpB Feature: domain Description: SmpB Location: 1300796-1301240 bp Feature: domain Description: SmpB Location: 1 300796-1 301 240 bp Feature: gene Location: 1301359-1301835 bp Ori: QLI12991.1 Feature: domain Description: PRK10724 Location: 1301365-1301830 bp Feature: domain Description: PRK1 0724 Location: 1 301 365-1 301 830 bp Feature: gene Location: 3041232-3041480 bp Ori: QLI14551.1 Feature: domain Description: PRK10597 Location: 3041235-3041475 bp Feature: domain Description: PRK1 0597 Location: 3041 235-3041 475 bp Feature: gene Location: 3041703-3041987 bp Feature: gene Location: 3042065-3043552 bp Ori: QLI14553.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042470-3043160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042470-30431 60 bp Feature: gene Location: 3044002-3044211 bp Feature: gene Location: 3044208-3044939 bp Ori: QLI14555.1 Feature: domain Description: Laminin_G_3 Location: 3044544-3044883 bp Feature: domain Description: Laminin_G_3 Location: 3044544-3044883 bp Feature: gene Location: 3121386-3122651 bp Ori: QLI14638.1 Feature: domain Description: umuC Location: 3121389-3122649 bp Feature: domain Description: umuC Location: 31 21 389-31 22649 bp Feature: gene Location: 3122653-3123072 bp Ori: QLI16884.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3122656-3123067 bp Feature: domain Description: PRK1 0276 Location: 31 22656-31 23067 bp Feature: gene Location: 3123152-3124639 bp Ori: QLI14639.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3123557-3124247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 23557-31 24247 bp Feature: gene Location: 3125534-3125956 bp Ori: QLI14640.1 Feature: domain Description: XerC Location: 3125570-3125915 bp Feature: domain Description: XerC Location: 31 25570-31 2591 5 bp Feature: gene Location: 3126034-3126495 bp Feature: domain Description: PinE Location: 3126037-3126487 bp Feature: domain Description: PinE Location: 31 26037-31 26487 bp Feature: gene Location: 3306461-3307726 bp Ori: QLI14823.1 Feature: domain Description: umuC Location: 3306464-3307724 bp Feature: domain Description: umuC Location: 3306464-3307724 bp Feature: gene Location: 3307729-3308148 bp Ori: QLI14824.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3307732-3308143 bp Feature: domain Description: PRK1 0276 Location: 3307732-33081 43 bp Feature: gene Location: 3308227-3309714 bp Ori: QLI14825.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3308632-3309322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3308632-3309322 bp Feature: gene Location: 3310329-3310571 bp Ori: QLI14826.1 Feature: domain Description: DinI Location: 3310380-3310560 bp Feature: domain Description: DinI Location: 331 0380-331 0560 bp Feature: gene Location: 3310742-3311878 bp Ori: QLI16894.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3310922-3311825 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 331 0922-331 1 825 bp Feature: gene Location: 3643168-3643401 bp Ori: QLI15135.1 Feature: domain Description: DinI Location: 3643210-3643396 bp Feature: domain Description: DinI Location: 364321 0-3643396 bp Feature: gene Location: 3643412-3643600 bp Feature: gene Location: 3643701-3645188 bp Ori: QLI15136.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3644106-3644796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36441 06-3644796 bp Feature: gene Location: 3645676-3646656 bp Ori: QLI16913.1 Feature: domain Description: int Location: 3645679-3646606 bp Feature: domain Description: int Location: 3645679-3646606 bp Feature: gene Location: 3646779-3647342 bp Ori: QLI15137.1 Feature: domain Description: YbjK Location: 3646785-3647322 bp Feature: domain Description: YbjK Location: 3646785-3647322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-GII, Laminin_G_3 (pfam13385), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), XerC (COG4973)
PinE (COG1961), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), int (PHA02601), YbjK (COG3226)

Seq: CP049720.1 Klebsiella pneumoniae strain 06KM907 plasmid pMBR_F_DHA-1, complete sequence (204699 bp)
Overview 1 RT 1: 193863-198854 bp Neighborhood of RT #1 [193863, 198859] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 193863-194288 bp Ori: QLI17160.1 Feature: domain Description: Antirestrict Location: 193998-194286 bp Feature: domain Description: Antirestrict Location: 193998-1942 86 bp Feature: gene Location: 194809-195039 bp Feature: gene Location: 195273-196760 bp Ori: QLI17162.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195678-196368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195678-196368 bp Feature: gene Location: 197163-197588 bp Ori: QLI17163.1 Gene: umuD Feature: domain Description: PRK10276 Location: 197166-197574 bp Feature: domain Description: PRK102 76 Location: 197166-197574 bp Feature: gene Location: 197588-198859 bp Ori: QLI17164.1 Feature: domain Description: umuC Location: 197591-198854 bp Feature: domain Description: umuC Location: 197591-198854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)