myRT

myRT report for GCA_013416085.1_ASM1341608v1

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Seq: CP049949.1 Klebsiella pneumoniae strain 19KM267 plasmid pMBR_DHA-1_1CV2, complete sequence (43417 bp)
Overview 1 RT 1: 17487-20643 bp Neighborhood of RT #1 [17487, 20660] Zn_Tnp_IS1 HTH_Tnp_IS1 RVT-GII PRK10276 Feature: gene Location: 17487-18184 bp Feature: domain Description: Zn_Tnp_IS1 Location: 17493-17595 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1 7493-1 7595 bp Feature: domain Description: HTH_Tnp_IS1 Location: 17616-17748 bp Feature: domain Description: HTH_Tnp_IS1 Location: 1 761 6-1 7748 bp Feature: gene Location: 18218-18343 bp Feature: gene Location: 18336-19823 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18741-19431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8741 -1 9431 bp Feature: gene Location: 20136-20251 bp Feature: gene Location: 20229-20660 bp Ori: QLI22558.1 Gene: umuD Feature: domain Description: PRK10276 Location: 20280-20643 bp Feature: domain Description: PRK1 0276 Location: 20280-20643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP049947.1 Klebsiella pneumoniae strain 19KM267 chromosome, complete genome (5452021 bp)
Overview 1 RT 1: 1619506-1624699 bp 2 RT 2: 3058190-3061841 bp 3 RT 3: 3138343-3143444 bp 4 RT 4: 3323418-3328782 bp 5 RT 5: 3659760-3663914 bp 6 RT 6: 3746152-3752821 bp Neighborhood of RT #1 [1619506, 1624749] IclR PRK15440 RVT-GII PRK15440 MFS_ExuT_GudP_like Neighborhood of RT #2 [3058190, 3061897] PRK10597 RVT-GII Laminin_G_3 Neighborhood of RT #3 [3138343, 3143452] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #4 [3323418, 3328835] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #5 [3659760, 3663934] DinI RVT-GII int YbjK Neighborhood of RT #6 [3746152, 3752862] PRK10755 UvrB RVT-GII LivF Feature: gene Location: 1619506-1620291 bp Ori: QLI18730.1 Feature: domain Description: IclR Location: 1619533-1620259 bp Feature: domain Description: IclR Location: 1619533-162 02 59 bp Feature: gene Location: 1620302-1620487 bp Ori: QLI18731.1 Feature: domain Description: PRK15440 Location: 1620305-1620452 bp Feature: domain Description: PRK15440 Location: 162 0305-162 0452 bp Feature: gene Location: 1620817-1622304 bp Ori: QLI18732.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1621222-1621912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 12 2 2 -162 1912 bp Feature: gene Location: 1622362-1623417 bp Gene: rhmD Feature: domain Description: PRK15440 Location: 1622368-1623415 bp Feature: domain Description: PRK15440 Location: 162 2 368-162 3415 bp Feature: gene Location: 1623460-1624749 bp Ori: QLI22265.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 1623502-1624699 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 162 3502 -162 4699 bp Feature: gene Location: 3058190-3058438 bp Ori: QLI20011.1 Feature: domain Description: PRK10597 Location: 3058193-3058433 bp Feature: domain Description: PRK10597 Location: 3058193-3058433 bp Feature: gene Location: 3058661-3058945 bp Feature: gene Location: 3059023-3060510 bp Ori: QLI20013.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3059428-3060118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305942 8-3060118 bp Feature: gene Location: 3060960-3061169 bp Feature: gene Location: 3061166-3061897 bp Ori: QLI20015.1 Feature: domain Description: Laminin_G_3 Location: 3061502-3061841 bp Feature: domain Description: Laminin_G_3 Location: 3061502 -3061841 bp Feature: gene Location: 3138343-3139608 bp Ori: QLI20097.1 Feature: domain Description: umuC Location: 3138346-3139606 bp Feature: domain Description: umuC Location: 3138346-3139606 bp Feature: gene Location: 3139610-3140029 bp Ori: QLI22365.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3139613-3140024 bp Feature: domain Description: PRK102 76 Location: 3139613-314002 4 bp Feature: gene Location: 3140109-3141596 bp Ori: QLI20098.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3140514-3141204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3140514-31412 04 bp Feature: gene Location: 3142491-3142913 bp Ori: QLI20099.1 Feature: domain Description: XerC Location: 3142527-3142872 bp Feature: domain Description: XerC Location: 3142 52 7-3142 872 bp Feature: gene Location: 3142991-3143452 bp Feature: domain Description: PinE Location: 3142994-3143444 bp Feature: domain Description: PinE Location: 3142 994-3143444 bp Feature: gene Location: 3323418-3324683 bp Ori: QLI20282.1 Feature: domain Description: umuC Location: 3323421-3324681 bp Feature: domain Description: umuC Location: 332 342 1-332 4681 bp Feature: gene Location: 3324686-3325105 bp Ori: QLI20283.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3324689-3325100 bp Feature: domain Description: PRK102 76 Location: 332 4689-332 5100 bp Feature: gene Location: 3325184-3326671 bp Ori: QLI20284.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3325589-3326279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 5589-332 62 79 bp Feature: gene Location: 3327286-3327528 bp Ori: QLI20285.1 Feature: domain Description: DinI Location: 3327337-3327517 bp Feature: domain Description: DinI Location: 332 7337-332 7517 bp Feature: gene Location: 3327699-3328835 bp Ori: QLI22375.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3327879-3328782 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 332 7879-332 8782 bp Feature: gene Location: 3659760-3659993 bp Ori: QLI20593.1 Feature: domain Description: DinI Location: 3659802-3659988 bp Feature: domain Description: DinI Location: 3659802 -3659988 bp Feature: gene Location: 3660004-3660192 bp Feature: gene Location: 3660293-3661780 bp Ori: QLI20594.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660698-3661388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3660698-3661388 bp Feature: gene Location: 3662268-3663248 bp Ori: QLI22394.1 Feature: domain Description: int Location: 3662271-3663198 bp Feature: domain Description: int Location: 3662 2 71-3663198 bp Feature: gene Location: 3663371-3663934 bp Ori: QLI20595.1 Feature: domain Description: YbjK Location: 3663377-3663914 bp Feature: domain Description: YbjK Location: 3663377-3663914 bp Feature: gene Location: 3746152-3747249 bp Ori: QLI20668.1 Gene: pmrB Feature: domain Description: PRK10755 Location: 3746179-3747223 bp Feature: domain Description: PRK10755 Location: 3746179-37472 2 3 bp Feature: gene Location: 3747498-3749519 bp Ori: QLI20669.1 Gene: uvrB Feature: domain Description: UvrB Location: 3747504-3749505 bp Feature: domain Description: UvrB Location: 3747504-3749505 bp Feature: gene Location: 3749978-3751465 bp Ori: QLI20670.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3750383-3751073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3750383-3751073 bp Feature: gene Location: 3751841-3752053 bp Feature: gene Location: 3752140-3752862 bp Ori: QLI20672.1 Feature: domain Description: LivF Location: 3752143-3752821 bp Feature: domain Description: LivF Location: 3752 143-3752 82 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IclR (pfam01614), PRK15440 (L-rhamnonate dehydratase; Provisional), RVT-GII, MFS_ExuT_GudP_like (cd17319), PRK10597 (DNA damage-inducible protein I; Provisional), Laminin_G_3 (pfam13385), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), XerC (COG4973), PinE (COG1961)
DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), int (PHA02601), YbjK (COG3226), PRK10755 (two-component system sensor histidine kinase PmrB), UvrB (pfam12344), LivF (COG0410)