myRT

myRT report for GCA_013426115.1_ASM1342611v1

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Seq: CP058661.1 Escherichia coli strain 005008 chromosome, complete genome (4848135 bp)
Overview 1 RT 1: 56563-61280 bp 2 RT 2: 1395307-1400939 bp 3 RT 3: 1409884-1414718 bp 4 RT 4: 3120111-3124225 bp 5 RT 5: 3499758-3509924 bp Neighborhood of RT #1 [56563, 61280] IS285 InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1395307, 1400939] PRK09678 RVT-Retrons Arm-DNA-bind_3 InsE Neighborhood of RT #3 [1409884, 1414718] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3120111, 3124224] FimA PHA02517 RVT-GII GIIM InsE FimA Neighborhood of RT #5 [3499758, 3510319] PRK10396 InsE RVT-GII GIIM PHA02517 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 Feature: gene Location: 56563-57354 bp Feature: domain Description: IS285 Location: 56566-57343 bp Feature: domain Description: IS285 Location: 56566-57343 bp Feature: gene Location: 57410-58149 bp Feature: domain Description: InsE Location: 57413-57749 bp Feature: domain Description: InsE Location: 5741 3-57749 bp Feature: gene Location: 58822-60330 bp Ori: QLJ81923.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59080-59812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59080-5981 2 bp Feature: domain Description: GIIM Note: maturase Location: 59887-60085 bp Feature: domain Description: GIIM Note: maturase Location: 59887-60085 bp Feature: gene Location: 60411-60899 bp Feature: domain Description: PHA02517 Location: 60414-60888 bp Feature: domain Description: PHA0251 7 Location: 6041 4-60888 bp Feature: gene Location: 61074-61280 bp Feature: gene Location: 1395307-1395579 bp Ori: QLJ78994.1 Feature: domain Description: PRK09678 Location: 1395316-1395472 bp Feature: domain Description: PRK09678 Location: 1 39531 6-1 395472 bp Feature: gene Location: 1396225-1397193 bp Feature: gene Location: 1397195-1398127 bp Ori: QLJ78995.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1397297-1397891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 397297-1 397891 bp Feature: gene Location: 1398582-1399684 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1398591-1398843 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 398591 -1 398843 bp Feature: gene Location: 1400648-1400939 bp Ori: QLJ78996.1 Feature: domain Description: InsE Location: 1400651-1400939 bp Feature: domain Description: InsE Location: 1 400651 -1 400939 bp Feature: gene Location: 1409884-1410726 bp Ori: QLJ81971.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 1409983-1410379 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 1 409983-1 41 0379 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 1410385-1410664 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 1 41 0385-1 41 0664 bp Feature: gene Location: 1410912-1411629 bp Feature: domain Description: InsE Location: 1410951-1411200 bp Feature: domain Description: InsE Location: 1 41 0951 -1 41 1 200 bp Feature: gene Location: 1412302-1413810 bp Ori: QLJ81972.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412560-1413292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 2560-1 41 3292 bp Feature: domain Description: GIIM Note: maturase Location: 1413367-1413565 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 3367-1 41 3565 bp Feature: gene Location: 1413891-1414378 bp Feature: domain Description: PHA02517 Location: 1413894-1414065 bp Feature: domain Description: PHA0251 7 Location: 1 41 3894-1 41 4065 bp Feature: gene Location: 1414461-1414718 bp Feature: gene Location: 3120111-3120398 bp Feature: domain Description: FimA Location: 3120117-3120396 bp Feature: domain Description: FimA Location: 31 201 1 7-31 20396 bp Feature: gene Location: 3120440-3120913 bp Feature: domain Description: PHA02517 Location: 3120446-3120911 bp Feature: domain Description: PHA0251 7 Location: 31 20446-31 2091 1 bp Feature: gene Location: 3121003-3122511 bp Ori: QLJ82050.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3121261-3121993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 21 261 -31 21 993 bp Feature: domain Description: GIIM Note: maturase Location: 3122068-3122266 bp Feature: domain Description: GIIM Note: maturase Location: 31 22068-31 22266 bp Feature: gene Location: 3123184-3123923 bp Feature: domain Description: InsE Location: 3123187-3123526 bp Feature: domain Description: InsE Location: 31 231 87-31 23526 bp Feature: gene Location: 3123979-3124224 bp Feature: domain Description: FimA Location: 3123982-3124225 bp Feature: domain Description: FimA Location: 31 23982-31 24225 bp Feature: gene Location: 3499758-3500423 bp Ori: QLJ80789.1 Gene: yecA Feature: domain Description: PRK10396 Location: 3499761-3500421 bp Feature: domain Description: PRK1 0396 Location: 3499761 -3500421 bp Feature: gene Location: 3500958-3501643 bp Feature: domain Description: InsE Location: 3500970-3501234 bp Feature: domain Description: InsE Location: 3500970-3501 234 bp Feature: gene Location: 3502316-3503824 bp Ori: QLJ82072.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3502574-3503306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3502574-3503306 bp Feature: domain Description: GIIM Note: maturase Location: 3503381-3503579 bp Feature: domain Description: GIIM Note: maturase Location: 3503381 -3503579 bp Feature: gene Location: 3503905-3504363 bp Feature: domain Description: PHA02517 Location: 3503908-3504355 bp Feature: domain Description: PHA0251 7 Location: 3503908-3504355 bp Feature: gene Location: 3504584-3510319 bp Ori: QLJ80790.1 Feature: domain Description: DUF4011 Location: 3504674-3505508 bp Feature: domain Description: DUF401 1 Location: 3504674-3505508 bp Feature: domain Description: DEXXQc_SF1 Location: 3505865-3508967 bp Feature: domain Description: DEXXQc_SF1 Location: 3505865-3508967 bp Feature: domain Description: SF1_C_Upf1 Location: 3508976-3509504 bp Feature: domain Description: SF1 _C_Upf1 Location: 3508976-3509504 bp Feature: domain Description: MTES_1575 Location: 3509633-3509924 bp Feature: domain Description: MTES_1 575 Location: 3509633-3509924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), CE4_Ecf1_like_5s (cd10969), FimA (pfam16970)
PRK10396 (hypothetical protein; Provisional), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)