myRT

myRT report for GCA_013426735.1_ASM1342673v1

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Seq: AP023275.1 Agrobacterium vitis VAR06-30 plasmid pRvVAR0630b DNA, complete sequence (309504 bp)
Overview 1 RT 1: 34427-40534 bp 2 RT 2: 262203-265396 bp Neighborhood of RT #1 [34427, 40545] dCache_3 Tar PRK09793 RVT-GII GIIM GlxA Neighborhood of RT #2 [262203, 265425] COG5489 RVT_N RVT-GII GIIM HU_IHF WGR_MMR_like Feature: gene Location: 34427-36712 bp Ori: BCH62264.1 Feature: domain Description: dCache_3 Location: 34589-35249 bp Feature: domain Description: dCache_3 Location: 34589-35249 bp Feature: domain Description: Tar Location: 35249-35642 bp Feature: domain Description: Tar Location: 35249-35642 bp Feature: domain Description: PRK09793 Location: 35714-36557 bp Feature: domain Description: PRK09793 Location: 3571 4-36557 bp Feature: gene Location: 36996-37148 bp Feature: gene Location: 37785-39263 bp Ori: BCH62266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38196-38886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 96-38886 bp Feature: domain Description: GIIM Note: maturase Location: 38964-39180 bp Feature: domain Description: GIIM Note: maturase Location: 38964-391 80 bp Feature: gene Location: 39365-39571 bp Feature: gene Location: 39685-40545 bp Ori: BCH62268.1 Feature: domain Description: GlxA Location: 40222-40534 bp Feature: domain Description: GlxA Location: 40222-40534 bp Feature: gene Location: 262203-262514 bp Ori: BCH62506.1 Feature: domain Description: COG5489 Location: 262206-262512 bp Feature: domain Description: COG5489 Location: 262206-26251 2 bp Feature: gene Location: 262628-262822 bp Feature: gene Location: 262752-264293 bp Ori: BCH62508.1 Feature: domain Description: RVT_N Location: 262803-263031 bp Feature: domain Description: RVT_N Location: 262803-263031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263091-263730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263091 -263730 bp Feature: domain Description: GIIM Note: maturase Location: 263781-264015 bp Feature: domain Description: GIIM Note: maturase Location: 263781 -26401 5 bp Feature: gene Location: 264899-265069 bp Ori: BCH62509.1 Feature: domain Description: HU_IHF Location: 264914-265067 bp Feature: domain Description: HU_IHF Location: 26491 4-265067 bp Feature: gene Location: 265153-265425 bp Ori: BCH62510.1 Feature: domain Description: WGR_MMR_like Location: 265183-265396 bp Feature: domain Description: WGR_MMR_like Location: 2651 83-265396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dCache_3 (pfam14827), Tar (COG0840), PRK09793 (methyl-accepting chemotaxis protein IV), RVT-GII, GIIM (pfam08388), GlxA (COG4977), COG5489 (Uncharacterized conserved protein, DUF736 family ), RVT_N (pfam13655), HU_IHF (cl00257), WGR_MMR_like (cd07996)

Seq: AP023278.1 Agrobacterium vitis VAR06-30 plasmid pRvVAR0630e DNA, complete sequence (46112 bp)
Overview 1 RT 1: 2482-6830 bp Neighborhood of RT #1 [2482, 6862] OafA HTH_37 RVT-Retrons HTH_XRE PinE Feature: gene Location: 2482-3696 bp Ori: BCH62739.1 Feature: domain Description: OafA Location: 2563-3679 bp Feature: domain Description: OafA Location: 2 563-3679 bp Feature: gene Location: 3984-4190 bp Ori: BCH62740.1 Feature: domain Description: HTH_37 Location: 3993-4146 bp Feature: domain Description: HTH_37 Location: 3993-4146 bp Feature: gene Location: 4187-5230 bp Ori: BCH62741.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4367-4874 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4367-4874 bp Feature: gene Location: 5220-5591 bp Ori: BCH62742.1 Feature: domain Description: HTH_XRE Location: 5304-5466 bp Feature: domain Description: HTH_XRE Location: 5304-5466 bp Feature: gene Location: 6278-6862 bp Ori: BCH62743.1 Feature: domain Description: PinE Location: 6287-6830 bp Feature: domain Description: PinE Location: 62 87-6830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OafA (COG1835), HTH_37 (pfam13744), RVT-Retrons, HTH_XRE (smart00530), PinE (COG1961)