myRT

myRT report for GCA_013426915.1_ASM1342691v1

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Seq: AP023183.1 Paraburkholderia sp. PGU19 plasmid PPGU19_p3 DNA, complete sequence (852821 bp)
Overview 1 RT 1: 89612-94723 bp Neighborhood of RT #1 [89612, 94723] YobN RVT-GII GIIM HNHc RVT_N RVT-GII Rve Feature: gene Location: 89612-89929 bp Feature: gene Location: 90502-90690 bp Ori: BCG04970.1 Feature: domain Description: YobN Location: 90565-90679 bp Feature: domain Description: YobN Location: 90565-90679 bp Feature: gene Location: 91189-92103 bp Ori: BCG04971.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91192-91435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 1 92-91 435 bp Feature: domain Description: GIIM Note: maturase Location: 91489-91720 bp Feature: domain Description: GIIM Note: maturase Location: 91 489-91 720 bp Feature: domain Description: HNHc Note: nucleases Location: 91942-92089 bp Feature: domain Description: HNHc Note: nucleases Location: 91 942-92089 bp Feature: gene Location: 92100-92825 bp Ori: BCG04972.1 Feature: domain Description: RVT_N Location: 92145-92388 bp Feature: domain Description: RVT_N Location: 921 45-92388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92433-92799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92433-92799 bp Feature: gene Location: 93308-93946 bp Ori: BCG04973.1 Feature: domain Description: Rve Location: 93350-93872 bp Feature: domain Description: Rve Location: 93350-93872 bp Feature: gene Location: 94391-94723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YobN (COG1231), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), Rve (COG3316)

Seq: AP023179.1 Paraburkholderia sp. PGU19 DNA, chromosome 1, complete genome (3864670 bp)
Overview 1 RT 1: 269589-276024 bp 2 RT 2: 1166669-1169662 bp 3 RT 3: 2506553-2512660 bp 4 RT 4: 2920803-2923986 bp Neighborhood of RT #1 [269589, 276038] PRK14343 LipA RVT-GII GIIM NptA GlpR Neighborhood of RT #2 [1166669, 1169664] DUF5372 RVT-GII GIIM nlpD nlpD Neighborhood of RT #3 [2506553, 2512671] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Neighborhood of RT #4 [2920803, 2923986] YgaK HMPP_kinase RVT-GII GIIM DUF5372 Feature: gene Location: 269589-270269 bp Ori: BCF95668.1 Gene: lipB Feature: domain Description: PRK14343 Location: 269595-270258 bp Feature: domain Description: PRK14343 Location: 2 69595-2 702 58 bp Feature: gene Location: 270283-271284 bp Ori: BCF95669.1 Gene: lipA_1 Feature: domain Description: LipA Location: 270373-271270 bp Feature: domain Description: LipA Location: 2 70373-2 712 70 bp Feature: gene Location: 271844-273130 bp Ori: BCF95670.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272084-272705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 084-2 72 705 bp Feature: domain Description: GIIM Note: maturase Location: 272756-272966 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 756-2 72 966 bp Feature: gene Location: 273564-275246 bp Ori: BCF95671.1 Feature: domain Description: NptA Location: 273567-275163 bp Feature: domain Description: NptA Location: 2 73567-2 75163 bp Feature: gene Location: 275265-276038 bp Ori: BCF95672.1 Feature: domain Description: GlpR Location: 275268-276024 bp Feature: domain Description: GlpR Location: 2 752 68-2 7602 4 bp Feature: gene Location: 1166669-1167001 bp Feature: gene Location: 1167054-1167278 bp Ori: BCF96492.1 Feature: domain Description: DUF5372 Location: 1167057-1167237 bp Feature: domain Description: DUF5372 Location: 1167057-11672 37 bp Feature: gene Location: 1167410-1168381 bp Ori: BCF96493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167416-1167956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1167416-1167956 bp Feature: domain Description: GIIM Note: maturase Location: 1168007-1168217 bp Feature: domain Description: GIIM Note: maturase Location: 1168007-11682 17 bp Feature: gene Location: 1168502-1168831 bp Feature: gene Location: 1168978-1169664 bp Ori: BCF96495.1 Feature: domain Description: nlpD Location: 1169029-1169188 bp Feature: domain Description: nlpD Location: 116902 9-1169188 bp Feature: domain Description: nlpD Location: 1169227-1169662 bp Feature: domain Description: nlpD Location: 11692 2 7-1169662 bp Feature: gene Location: 2506553-2507425 bp Ori: BCF97717.1 Feature: domain Description: PssA Location: 2506688-2507369 bp Feature: domain Description: PssA Location: 2 506688-2 507369 bp Feature: gene Location: 2507446-2508084 bp Ori: BCF97718.1 Gene: psd Feature: domain Description: PRK05305 Location: 2507470-2508079 bp Feature: domain Description: PRK05305 Location: 2 507470-2 508079 bp Feature: gene Location: 2508201-2509901 bp Ori: BCF97719.1 Feature: domain Description: RVT_N Location: 2508258-2508501 bp Feature: domain Description: RVT_N Location: 2 5082 58-2 508501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2508546-2509194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 508546-2 509194 bp Feature: domain Description: GIIM Note: maturase Location: 2509248-2509479 bp Feature: domain Description: GIIM Note: maturase Location: 2 5092 48-2 509479 bp Feature: domain Description: HNHc Note: nucleases Location: 2509722-2509863 bp Feature: domain Description: HNHc Note: nucleases Location: 2 50972 2 -2 509863 bp Feature: gene Location: 2511061-2512077 bp Ori: BCF97720.1 Gene: ilvC Feature: domain Description: PRK05479 Location: 2511064-2512045 bp Feature: domain Description: PRK05479 Location: 2 511064-2 512 045 bp Feature: gene Location: 2512180-2512671 bp Ori: BCF97721.1 Gene: ilvH Feature: domain Description: ilvH Location: 2512183-2512660 bp Feature: domain Description: ilvH Location: 2 512 183-2 512 660 bp Feature: gene Location: 2920803-2920955 bp Ori: BCF98085.1 Gene: rubA_2 Feature: domain Description: YgaK Location: 2920806-2920950 bp Feature: domain Description: YgaK Location: 2 92 0806-2 92 0950 bp Feature: gene Location: 2921236-2922096 bp Ori: BCF98086.1 Feature: domain Description: HMPP_kinase Location: 2921263-2921977 bp Feature: domain Description: HMPP_kinase Location: 2 92 12 63-2 92 1977 bp Feature: gene Location: 2922280-2923302 bp Ori: BCF98087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2922295-2922883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 2 2 95-2 92 2 883 bp Feature: domain Description: GIIM Note: maturase Location: 2922934-2923138 bp Feature: domain Description: GIIM Note: maturase Location: 2 92 2 934-2 92 3138 bp Feature: gene Location: 2923320-2923601 bp Ori: BCF98088.1 Feature: domain Description: DUF5372 Location: 2923338-2923560 bp Feature: domain Description: DUF5372 Location: 2 92 3338-2 92 3560 bp Feature: gene Location: 2923654-2923986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14343 (lipoyl(octanoyl) transferase LipB), LipA (COG0320), RVT-GII, GIIM (pfam08388), NptA (COG1283), GlpR (COG1349), DUF5372 (pfam17342), nlpD (PRK10871), PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein)
RVT_N (pfam13655), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895), YgaK (COG1773), HMPP_kinase (cd01169)

Seq: AP023181.1 Paraburkholderia sp. PGU19 plasmid PPGU19_p1 DNA, complete sequence (2380791 bp)
Overview 1 RT 1: 225890-230121 bp 2 RT 2: 312818-315075 bp Neighborhood of RT #1 [225890, 230121] LysR TetR_N TetR_C_13 RVT-GII RVT-GII rve_3 Neighborhood of RT #2 [312818, 315075] DUF5372 RVT-GII GIIM Feature: gene Location: 225890-226906 bp Ori: BCG01605.1 Feature: domain Description: LysR Location: 225974-226835 bp Feature: domain Description: LysR Location: 225974-22683 5 bp Feature: gene Location: 227192-227782 bp Ori: BCG01606.1 Feature: domain Description: TetR_N Location: 227249-227360 bp Feature: domain Description: TetR_N Location: 227249-2273 60 bp Feature: domain Description: TetR_C_13 Location: 227435-227756 bp Feature: domain Description: TetR_C_13 Location: 22743 5-227756 bp Feature: gene Location: 228099-228716 bp Ori: BCG01607.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228516-228696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228516-228696 bp Feature: gene Location: 228792-229193 bp Ori: BCG01608.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228795-229131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 228795-22913 1 bp Feature: gene Location: 229220-229663 bp Ori: BCG01609.1 Feature: domain Description: rve_3 Location: 229262-229460 bp Feature: domain Description: rve_3 Location: 229262-229460 bp Feature: gene Location: 229861-230121 bp Feature: gene Location: 312818-313150 bp Feature: gene Location: 313203-313484 bp Ori: BCG01689.1 Feature: domain Description: DUF5372 Location: 313221-313443 bp Feature: domain Description: DUF53 72 Location: 3 13 221-3 13 443 bp Feature: gene Location: 313541-314527 bp Ori: BCG01690.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313544-314144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 13 544-3 14144 bp Feature: domain Description: GIIM Note: maturase Location: 314222-314456 bp Feature: domain Description: GIIM Note: maturase Location: 3 14222-3 14456 bp Feature: gene Location: 314538-314747 bp Feature: gene Location: 314860-315075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), TetR_N (pfam00440), TetR_C_13 (pfam16925), RVT-GII, rve_3 (pfam13683), DUF5372 (pfam17342), GIIM (pfam08388)