myRT

myRT report for GCA_013459835.1_ASM1345983v1

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Seq: CP030798.1 Vibrio owensii strain 20160513VC2W chromosome 1, complete sequence (4056939 bp)
Overview 1 RT 1: 1819876-1826701 bp 2 RT 2: 2233030-2242116 bp 3 RT 3: 2707336-2713497 bp 4 RT 4: 3578585-3583747 bp Neighborhood of RT #1 [1819876, 1826718] recD_rel RVT_N RVT-GII GIIM PRK09228 Neighborhood of RT #2 [2233030, 2242121] PDC1_MCP_like Tar CitT RVT_N RVT-GII GIIM psd Neighborhood of RT #3 [2707336, 2713497] DDE_Tnp_Tn3 DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM DDE_Tnp_Tn3 Neighborhood of RT #4 [3578585, 3583953] Methyltransf_23 HNH_4 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 1819876-1820322 bp Feature: gene Location: 1820319-1822520 bp Ori: QLK45319.1 Feature: domain Description: recD_rel Location: 1820586-1822458 bp Feature: domain Description: recD_rel Location: 1 820586-1 822458 bp Feature: gene Location: 1823359-1824831 bp Ori: QLK45320.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1823407-1823650 bp Feature: domain Description: RVT_N Location: 1 823407-1 823650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1823695-1824322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 823695-1 824322 bp Feature: domain Description: GIIM Note: maturase Location: 1824382-1824607 bp Feature: domain Description: GIIM Note: maturase Location: 1 824382-1 824607 bp Feature: gene Location: 1824753-1824968 bp Feature: gene Location: 1825348-1826718 bp Ori: QLK45321.1 Gene: guaD Feature: domain Description: PRK09228 Location: 1825417-1826701 bp Feature: domain Description: PRK09228 Location: 1 82541 7-1 826701 bp Feature: gene Location: 2233030-2234910 bp Ori: QLK45626.1 Feature: domain Description: PDC1_MCP_like Location: 2233060-2233531 bp Feature: domain Description: PDC1 _MCP_like Location: 2233060-2233531 bp Feature: domain Description: Tar Location: 2233705-2234908 bp Feature: domain Description: Tar Location: 2233705-2234908 bp Feature: gene Location: 2235197-2236612 bp Ori: QLK45627.1 Feature: domain Description: CitT Location: 2235227-2236604 bp Feature: domain Description: CitT Location: 2235227-2236604 bp Feature: gene Location: 2236787-2238259 bp Ori: QLK45628.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2236835-2237078 bp Feature: domain Description: RVT_N Location: 2236835-2237078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2237123-2237750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22371 23-2237750 bp Feature: domain Description: GIIM Note: maturase Location: 2237810-2238035 bp Feature: domain Description: GIIM Note: maturase Location: 223781 0-2238035 bp Feature: gene Location: 2238947-2241001 bp Feature: gene Location: 2241264-2242121 bp Ori: QLK45630.1 Gene: psd Feature: domain Description: psd Location: 2241267-2242116 bp Feature: domain Description: psd Location: 2241 267-22421 1 6 bp Feature: gene Location: 2707336-2707914 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2707339-2707912 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2707339-270791 2 bp Feature: gene Location: 2708052-2710769 bp Feature: domain Description: DUF4158 Location: 2708079-2708571 bp Feature: domain Description: DUF41 58 Location: 2708079-2708571 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2709795-2710770 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2709795-271 0770 bp Feature: gene Location: 2710880-2712352 bp Ori: QLK45993.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2710928-2711171 bp Feature: domain Description: RVT_N Location: 271 0928-271 1 1 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2711216-2711843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 1 21 6-271 1 843 bp Feature: domain Description: GIIM Note: maturase Location: 2711903-2712128 bp Feature: domain Description: GIIM Note: maturase Location: 271 1 903-271 21 28 bp Feature: gene Location: 2712949-2713191 bp Ori: QLK45994.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 2712958-2713126 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 271 2958-271 31 26 bp Feature: gene Location: 2713306-2713497 bp Feature: gene Location: 3578585-3579163 bp Ori: QLK46734.1 Feature: domain Description: Methyltransf_23 Location: 3578624-3578978 bp Feature: domain Description: Methyltransf_23 Location: 3578624-3578978 bp Feature: gene Location: 3579160-3580158 bp Ori: QLK46735.1 Feature: domain Description: HNH_4 Location: 3579775-3579910 bp Feature: domain Description: HNH_4 Location: 3579775-357991 0 bp Feature: gene Location: 3580531-3581544 bp Ori: QLK46736.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3580705-3581296 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3580705-3581 296 bp Feature: gene Location: 3581537-3583162 bp Ori: QLK46737.1 Feature: domain Description: COG3950 Location: 3581744-3583082 bp Feature: domain Description: COG3950 Location: 3581 744-3583082 bp Feature: gene Location: 3583168-3583953 bp Ori: QLK46738.1 Feature: domain Description: TIGR02646 Location: 3583285-3583747 bp Feature: domain Description: TIGR02646 Location: 3583285-3583747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recD_rel (TIGR01448), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK09228 (guanine deaminase; Provisional), PDC1_MCP_like (cd12913), Tar (COG0840), CitT (pfam12431), psd (PRK00044), DDE_Tnp_Tn3 (pfam01526)
DUF4158 (pfam13700), Methyltransf_23 (pfam13489), HNH_4 (pfam13395), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: CP030799.1 Vibrio owensii strain 20160513VC2W chromosome 2, complete sequence (2828350 bp)
Overview 1 RT 1: 136989-143124 bp 2 RT 2: 547492-553295 bp 3 RT 3: 734048-739256 bp 4 RT 4: 1503099-1508902 bp 5 RT 5: 2044448-2057471 bp Neighborhood of RT #1 [136989, 143149] DDE_Tnp_Tn3 RVT_N RVT-GII GIIM DUF4158 DDE_Tnp_Tn3 DDE_Tnp_Tn3 Neighborhood of RT #2 [547492, 553300] recD_rel RVT_N RVT-GII GIIM PHA01082 Neighborhood of RT #3 [734048, 739282] PRK09228 group_II_RT_mat RVT-GII GIIM recD_rel AAA_30 Neighborhood of RT #4 [1503099, 1508907] recD_rel RVT_N RVT-GII GIIM PHA01082 Neighborhood of RT #5 [2044448, 2057471] ccoP CccA ccoP RVT_N RVT-GII GIIM Pat_hypo_Ecoli_Z1214_like YjcZ PRK09866 RVT_N RVT-GII GIIM M48C_Oma1-like Feature: gene Location: 136989-137180 bp Feature: gene Location: 137295-137537 bp Ori: QLK47379.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 137304-137472 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 137304-137472 bp Feature: gene Location: 138134-139606 bp Ori: QLK47380.1 Gene: ltrA Feature: domain Description: RVT_N Location: 138182-138425 bp Feature: domain Description: RVT_N Location: 138182 -13842 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138470-139097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138470-139097 bp Feature: domain Description: GIIM Note: maturase Location: 139157-139382 bp Feature: domain Description: GIIM Note: maturase Location: 139157-139382 bp Feature: gene Location: 139678-142434 bp Feature: domain Description: DUF4158 Location: 139705-140197 bp Feature: domain Description: DUF4158 Location: 139705-140197 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 141421-142405 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 14142 1-142 405 bp Feature: gene Location: 142572-143149 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 142575-143124 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 142 575-14312 4 bp Feature: gene Location: 547492-547929 bp Feature: gene Location: 547926-550091 bp Ori: QLK47692.1 Feature: domain Description: recD_rel Location: 548145-550080 bp Feature: domain Description: recD_rel Location: 548145-550080 bp Feature: gene Location: 550692-552164 bp Ori: QLK47693.1 Gene: ltrA Feature: domain Description: RVT_N Location: 550740-550983 bp Feature: domain Description: RVT_N Location: 550740-550983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551028-551655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55102 8-551655 bp Feature: domain Description: GIIM Note: maturase Location: 551715-551940 bp Feature: domain Description: GIIM Note: maturase Location: 551715-551940 bp Feature: gene Location: 552483-552737 bp Feature: gene Location: 552980-553300 bp Ori: QLK47695.1 Feature: domain Description: PHA01082 Location: 552992-553295 bp Feature: domain Description: PHA01082 Location: 552 992 -5532 95 bp Feature: gene Location: 734048-735418 bp Ori: QLK47831.1 Gene: guaD Feature: domain Description: PRK09228 Location: 734117-735401 bp Feature: domain Description: PRK092 2 8 Location: 734117-735401 bp Feature: gene Location: 735798-736012 bp Feature: gene Location: 735934-737402 bp Gene: ltrA Feature: domain Description: group_II_RT_mat Note: maturase Location: 736114-736282 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 736114-7362 82 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736516-736894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736516-736894 bp Feature: domain Description: GIIM Note: maturase Location: 736954-737179 bp Feature: domain Description: GIIM Note: maturase Location: 736954-737179 bp Feature: gene Location: 738241-739026 bp Ori: QLK47832.1 Feature: domain Description: recD_rel Location: 738247-738964 bp Feature: domain Description: recD_rel Location: 7382 47-738964 bp Feature: gene Location: 739028-739282 bp Ori: QLK47833.1 Feature: domain Description: AAA_30 Location: 739037-739256 bp Feature: domain Description: AAA_30 Location: 739037-7392 56 bp Feature: gene Location: 1503099-1503536 bp Feature: gene Location: 1503533-1505698 bp Ori: QLK48493.1 Feature: domain Description: recD_rel Location: 1503752-1505687 bp Feature: domain Description: recD_rel Location: 1503752 -1505687 bp Feature: gene Location: 1506299-1507771 bp Ori: QLK48494.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1506347-1506590 bp Feature: domain Description: RVT_N Location: 1506347-1506590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506635-1507262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1506635-15072 62 bp Feature: domain Description: GIIM Note: maturase Location: 1507322-1507547 bp Feature: domain Description: GIIM Note: maturase Location: 150732 2 -1507547 bp Feature: gene Location: 1508090-1508344 bp Feature: gene Location: 1508587-1508907 bp Ori: QLK48496.1 Feature: domain Description: PHA01082 Location: 1508599-1508902 bp Feature: domain Description: PHA01082 Location: 1508599-1508902 bp Feature: gene Location: 2044448-2046604 bp Ori: QLK48946.1 Feature: domain Description: ccoP Location: 2044544-2045321 bp Feature: domain Description: ccoP Location: 2 044544-2 04532 1 bp Feature: domain Description: CccA Location: 2045591-2045990 bp Feature: domain Description: CccA Location: 2 045591-2 045990 bp Feature: domain Description: ccoP Location: 2046218-2046479 bp Feature: domain Description: ccoP Location: 2 0462 18-2 046479 bp Feature: gene Location: 2046633-2046848 bp Feature: gene Location: 2046897-2048369 bp Ori: QLK48948.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2046945-2047188 bp Feature: domain Description: RVT_N Location: 2 046945-2 047188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2047233-2047860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0472 33-2 047860 bp Feature: domain Description: GIIM Note: maturase Location: 2047917-2048145 bp Feature: domain Description: GIIM Note: maturase Location: 2 047917-2 048145 bp Feature: gene Location: 2049174-2050247 bp Ori: QLK48949.1 Feature: domain Description: Pat_hypo_Ecoli_Z1214_like Location: 2049189-2050101 bp Feature: domain Description: Pat_hypo_Ecoli_Z12 14_like Location: 2 049189-2 050101 bp Feature: gene Location: 2050244-2051131 bp Ori: QLK48950.1 Feature: domain Description: YjcZ Location: 2050319-2051114 bp Feature: domain Description: YjcZ Location: 2 050319-2 051114 bp Feature: gene Location: 2051103-2053511 bp Ori: QLK48951.1 Feature: domain Description: PRK09866 Location: 2051220-2053449 bp Feature: domain Description: PRK09866 Location: 2 0512 2 0-2 053449 bp Feature: gene Location: 2053730-2053948 bp Feature: gene Location: 2053870-2055342 bp Ori: QLK48952.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2053918-2054161 bp Feature: domain Description: RVT_N Location: 2 053918-2 054161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2054206-2054833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0542 06-2 054833 bp Feature: domain Description: GIIM Note: maturase Location: 2054893-2055118 bp Feature: domain Description: GIIM Note: maturase Location: 2 054893-2 055118 bp Feature: gene Location: 2056064-2057107 bp Ori: QLK48953.1 Feature: domain Description: M48C_Oma1-like Location: 2056439-2056859 bp Feature: domain Description: M48C_Oma1-like Location: 2 056439-2 056859 bp Feature: gene Location: 2057097-2057471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4158 (pfam13700), recD_rel (TIGR01448), PHA01082 (putative transcription regulator), PRK09228 (guanine deaminase; Provisional), group_II_RT_mat (TIGR04416), AAA_30 (pfam13604)
ccoP (TIGR00782), CccA (COG2010), Pat_hypo_Ecoli_Z1214_like (cd07209), YjcZ (pfam13990), PRK09866 (clamp-binding protein CrfC), M48C_Oma1-like (cd07324)