myRT

myRT report for GCA_013462805.1_ASM1346280v1

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Seq: CP040512.1 Acidithiobacillus ferrooxidans strain YNTRS-40 plasmid p1, complete sequence (47104 bp)
Overview 1 RT 1: 38364-42242 bp Neighborhood of RT #1 [38364, 42612] StbC RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Feature: gene Location: 38364-38507 bp Feature: domain Description: StbC Location: 38367-38481 bp Feature: domain Description: StbC Location: 38367-38481 bp Feature: gene Location: 38546-38819 bp Feature: gene Location: 38875-40356 bp Ori: QLK43776.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39286-39976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39286-39976 bp Feature: gene Location: 41122-41343 bp Feature: gene Location: 41399-42612 bp Feature: domain Description: zf-ISL3 Location: 41528-41657 bp Feature: domain Description: zf-ISL3 Location: 41 528-41 657 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 41675-41822 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 41 675-41 822 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 41867-42242 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 41 867-42242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT StbC (COG4691), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610)

Seq: CP040511.1 Acidithiobacillus ferrooxidans strain YNTRS-40 chromosome, complete genome (3209933 bp)
Overview 1 RT 1: 963840-971707 bp 2 RT 2: 2362726-2367456 bp Neighborhood of RT #1 [963840, 971760] RVT-GII GIIM PHA02517 TIGR02687 Neighborhood of RT #2 [2362726, 2367479] HTH_Tnp_1 HTH_Tnp_1 YkfC RVT-GII Phage_int_SAM_1 INT_RitA_C_like Feature: gene Location: 963840-965359 bp Feature: gene Location: 965688-966435 bp Feature: gene Location: 967110-968627 bp Ori: QLK41607.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967368-968106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 967368-968106 bp Feature: domain Description: GIIM Note: maturase Location: 968196-968379 bp Feature: domain Description: GIIM Note: maturase Location: 968196-968379 bp Feature: gene Location: 968718-969206 bp Feature: domain Description: PHA02517 Location: 968724-969183 bp Feature: domain Description: PHA02 517 Location: 96872 4-969183 bp Feature: gene Location: 969253-971760 bp Ori: QLK41608.1 Gene: pglZ Feature: domain Description: TIGR02687 Location: 969268-971707 bp Feature: domain Description: TIGR02 687 Location: 9692 68-971707 bp Feature: gene Location: 2362726-2363672 bp Feature: domain Description: HTH_Tnp_1 Location: 2362732-2362891 bp Feature: domain Description: HTH_Tnp_1 Location: 2 362 732 -2 362 891 bp Feature: domain Description: HTH_Tnp_1 Location: 2362909-2363131 bp Feature: domain Description: HTH_Tnp_1 Location: 2 362 909-2 363131 bp Feature: gene Location: 2364350-2364520 bp Feature: domain Description: YkfC Location: 2364353-2364515 bp Feature: domain Description: YkfC Location: 2 364353-2 364515 bp Feature: gene Location: 2364781-2365809 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2364871-2365609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 364871-2 365609 bp Feature: gene Location: 2365899-2366078 bp Feature: gene Location: 2366235-2367479 bp Ori: QLK42782.1 Feature: domain Description: Phage_int_SAM_1 Location: 2366610-2366847 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 366610-2 366847 bp Feature: domain Description: INT_RitA_C_like Location: 2366928-2367456 bp Feature: domain Description: INT_RitA_C_like Location: 2 36692 8-2 367456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), TIGR02687 (TIGR02687 family protein), HTH_Tnp_1 (pfam01527), YkfC (COG3344), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188)