myRT

myRT report for GCA_013487925.1_ASM1348792v1

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Seq: CP047416.1 Lactobacillus reuteri strain 1B chromosome, complete genome (2243550 bp)
Overview 1 RT 1: 101415-110707 bp 2 RT 2: 117293-124909 bp 3 RT 3: 221494-228265 bp 4 RT 4: 1412001-1416764 bp 5 RT 5: 1758633-1763834 bp 6 RT 6: 2138811-2144822 bp Neighborhood of RT #1 [101415, 110742] trehalose_treC MFS_SLC45_SUC RVT-GII GIIM carB PRK12564 Neighborhood of RT #2 [117293, 124914] ApbE RAYT RVT-GII GIIM PRK05431 PBP2_GlnP HisM Neighborhood of RT #3 [221494, 228303] DDE_Tnp_1_3 Tcp10_C Tcp10_C Tcp10_C rib_alpha rib_alpha Gram_pos_anchor RVT-GII MFS_ShiA_like SDR_c Neighborhood of RT #4 [1412001, 1416769] YqeG UPF0236 RVT-GII GIIM RplT rpmI Neighborhood of RT #5 [1758633, 1763836] galactose_mutarotase_like RVT-GII GIIM PRK10287 DacC Neighborhood of RT #6 [2138811, 2144822] HTH_LacI PBP1_Qymf_like KxYKxGKxW FlgJ LysM LysM LysM LysM LysM RVT-GII HTH_ARSR Feature: gene Location: 101415-103097 bp Ori: QLL75172.1 Feature: domain Description: trehalose_treC Location: 101433-103092 bp Feature: domain Description: trehalose_treC Location: 1 01 433-1 03092 bp Feature: gene Location: 103115-104500 bp Ori: QLL75173.1 Feature: domain Description: MFS_SLC45_SUC Location: 103208-104450 bp Feature: domain Description: MFS_SLC45_SUC Location: 1 03208-1 04450 bp Feature: gene Location: 105023-106405 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105341-105959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05341 -1 05959 bp Feature: domain Description: GIIM Note: maturase Location: 106013-106241 bp Feature: domain Description: GIIM Note: maturase Location: 1 0601 3-1 06241 bp Feature: gene Location: 106491-109661 bp Ori: QLL75174.1 Gene: carB Feature: domain Description: carB Location: 106494-109629 bp Feature: domain Description: carB Location: 1 06494-1 09629 bp Feature: gene Location: 109654-110742 bp Ori: QLL75175.1 Gene: carA Feature: domain Description: PRK12564 Location: 109657-110707 bp Feature: domain Description: PRK1 2564 Location: 1 09657-1 1 0707 bp Feature: gene Location: 117293-118225 bp Ori: QLL75182.1 Feature: domain Description: ApbE Location: 117317-118196 bp Feature: domain Description: ApbE Location: 1 1 731 7-1 1 81 96 bp Feature: gene Location: 118437-118891 bp Gene: tnpA Feature: domain Description: RAYT Location: 118455-118599 bp Feature: domain Description: RAYT Location: 1 1 8455-1 1 8599 bp Feature: gene Location: 119280-120338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119364-119886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9364-1 1 9886 bp Feature: domain Description: GIIM Note: maturase Location: 119946-120174 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 9946-1 201 74 bp Feature: gene Location: 121875-123182 bp Ori: QLL75183.1 Gene: serS Feature: domain Description: PRK05431 Location: 121878-123144 bp Feature: domain Description: PRK05431 Location: 1 21 878-1 231 44 bp Feature: gene Location: 123451-124914 bp Ori: QLL75184.1 Feature: domain Description: PBP2_GlnP Location: 123562-124231 bp Feature: domain Description: PBP2_GlnP Location: 1 23562-1 24231 bp Feature: domain Description: HisM Location: 124285-124909 bp Feature: domain Description: HisM Location: 1 24285-1 24909 bp Feature: gene Location: 221494-222372 bp Ori: QLL75255.1 Feature: domain Description: DDE_Tnp_1_3 Location: 221839-222259 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 221 839-222259 bp Feature: gene Location: 222432-225215 bp Ori: QLL75256.1 Gene: lea Feature: domain Description: Tcp10_C Location: 223620-223956 bp Feature: domain Description: Tcp1 0_C Location: 223620-223956 bp Feature: domain Description: Tcp10_C Location: 224109-224223 bp Feature: domain Description: Tcp1 0_C Location: 2241 09-224223 bp Feature: domain Description: Tcp10_C Location: 224355-224457 bp Feature: domain Description: Tcp1 0_C Location: 224355-224457 bp Feature: domain Description: rib_alpha Location: 224607-224751 bp Feature: domain Description: rib_alpha Location: 224607-224751 bp Feature: domain Description: rib_alpha Location: 224874-224934 bp Feature: domain Description: rib_alpha Location: 224874-224934 bp Feature: domain Description: Gram_pos_anchor Location: 225093-225213 bp Feature: domain Description: Gram_pos_anchor Location: 225093-22521 3 bp Feature: gene Location: 225516-225665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225519-225663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22551 9-225663 bp Feature: gene Location: 226077-227399 bp Ori: QLL75257.1 Feature: domain Description: MFS_ShiA_like Location: 226149-227358 bp Feature: domain Description: MFS_ShiA_like Location: 2261 49-227358 bp Feature: gene Location: 227563-228303 bp Ori: QLL75258.1 Feature: domain Description: SDR_c Location: 227575-228265 bp Feature: domain Description: SDR_c Location: 227575-228265 bp Feature: gene Location: 1412001-1412531 bp Ori: QLL76337.1 Feature: domain Description: YqeG Location: 1412010-1412517 bp Feature: domain Description: YqeG Location: 1 41 201 0-1 41 251 7 bp Feature: gene Location: 1412682-1414100 bp Ori: QLL76338.1 Feature: domain Description: UPF0236 Location: 1412700-1413894 bp Feature: domain Description: UPF0236 Location: 1 41 2700-1 41 3894 bp Feature: gene Location: 1414292-1415674 bp Ori: QLL76339.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414610-1415228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 461 0-1 41 5228 bp Feature: domain Description: GIIM Note: maturase Location: 1415282-1415510 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 5282-1 41 551 0 bp Feature: gene Location: 1416174-1416527 bp Ori: QLL76340.1 Gene: rplT Feature: domain Description: RplT Location: 1416177-1416522 bp Feature: domain Description: RplT Location: 1 41 61 77-1 41 6522 bp Feature: gene Location: 1416572-1416769 bp Ori: QLL76341.1 Gene: rpmI Feature: domain Description: rpmI Location: 1416575-1416764 bp Feature: domain Description: rpmI Location: 1 41 6575-1 41 6764 bp Feature: gene Location: 1758633-1758833 bp Feature: gene Location: 1758951-1759988 bp Ori: QLL76661.1 Feature: domain Description: galactose_mutarotase_like Location: 1759005-1759977 bp Feature: domain Description: galactose_mutarotase_like Location: 1 759005-1 759977 bp Feature: gene Location: 1760089-1761471 bp Ori: QLL76662.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760407-1761025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 760407-1 761 025 bp Feature: domain Description: GIIM Note: maturase Location: 1761079-1761307 bp Feature: domain Description: GIIM Note: maturase Location: 1 761 079-1 761 307 bp Feature: gene Location: 1761974-1762414 bp Ori: QLL76663.1 Feature: domain Description: PRK10287 Location: 1762244-1762391 bp Feature: domain Description: PRK1 0287 Location: 1 762244-1 762391 bp Feature: gene Location: 1762592-1763836 bp Ori: QLL76664.1 Feature: domain Description: DacC Location: 1762631-1763834 bp Feature: domain Description: DacC Location: 1 762631 -1 763834 bp Feature: gene Location: 2138811-2139755 bp Ori: QLL76989.1 Feature: domain Description: HTH_LacI Location: 2138829-2138979 bp Feature: domain Description: HTH_LacI Location: 21 38829-21 38979 bp Feature: domain Description: PBP1_Qymf_like Location: 2138997-2139750 bp Feature: domain Description: PBP1 _Qymf_like Location: 21 38997-21 39750 bp Feature: gene Location: 2140181-2142088 bp Ori: QLL76990.1 Feature: domain Description: KxYKxGKxW Location: 2140214-2140277 bp Feature: domain Description: KxYKxGKxW Location: 21 4021 4-21 40277 bp Feature: domain Description: FlgJ Location: 2140328-2141066 bp Feature: domain Description: FlgJ Location: 21 40328-21 41 066 bp Feature: domain Description: LysM Location: 2141144-2141270 bp Feature: domain Description: LysM Location: 21 41 1 44-21 41 270 bp Feature: domain Description: LysM Location: 2141351-2141477 bp Feature: domain Description: LysM Location: 21 41 351 -21 41 477 bp Feature: domain Description: LysM Location: 2141561-2141687 bp Feature: domain Description: LysM Location: 21 41 561 -21 41 687 bp Feature: domain Description: LysM Location: 2141771-2141897 bp Feature: domain Description: LysM Location: 21 41 771 -21 41 897 bp Feature: domain Description: LysM Location: 2141960-2142083 bp Feature: domain Description: LysM Location: 21 41 960-21 42083 bp Feature: gene Location: 2142605-2143988 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2142923-2143151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 42923-21 431 51 bp Feature: gene Location: 2144164-2144484 bp Ori: QLL76991.1 Feature: domain Description: HTH_ARSR Location: 2144233-2144455 bp Feature: domain Description: HTH_ARSR Location: 21 44233-21 44455 bp Feature: gene Location: 2144586-2144822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trehalose_treC (TIGR02403), MFS_SLC45_SUC (cd17313), RVT-GII, GIIM (pfam08388), carB (PRK12815), PRK12564 (carbamoyl-phosphate synthase small subunit), ApbE (pfam02424), RAYT (COG1943), PRK05431 (seryl-tRNA synthetase; Provisional), PBP2_GlnP (cd13619)
HisM (COG0765), DDE_Tnp_1_3 (pfam13612), Tcp10_C (pfam07202), rib_alpha (TIGR02331), Gram_pos_anchor (pfam00746), MFS_ShiA_like (cd17369), SDR_c (cd05233), YqeG (COG2179), UPF0236 (pfam06782), RplT (COG0292)
rpmI (PRK00172), galactose_mutarotase_like (cd09019), PRK10287 (thiosulfate:cyanide sulfurtransferase; Provisional), DacC (COG1686), HTH_LacI (cd01392), PBP1_Qymf_like, KxYKxGKxW (TIGR03715), FlgJ (COG1705), LysM (smart00257), HTH_ARSR (smart00418)

Seq: CP047417.1 Lactobacillus reuteri strain 1B plasmid unnamed, complete sequence (29164 bp)
Overview 1 RT 1: 7381-28696 bp Neighborhood of RT #1 [7381, 28752] Tra8 RVT-GII GIIM YSIRK_signal DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 DUF1542 Gram_pos_anchor Transposase_mut Feature: gene Location: 7381-8496 bp Feature: domain Description: Tra8 Location: 7435-8158 bp Feature: domain Description: Tra8 Location: 7435-8158 bp Feature: gene Location: 8550-8813 bp Feature: gene Location: 8932-10314 bp Ori: QLL77157.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9250-9868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 50-9868 bp Feature: domain Description: GIIM Note: maturase Location: 9925-10150 bp Feature: domain Description: GIIM Note: maturase Location: 992 5-10150 bp Feature: gene Location: 11046-27110 bp Ori: QLL77158.1 Gene: lea Feature: domain Description: YSIRK_signal Location: 11079-11151 bp Feature: domain Description: YSIRK_signal Location: 11079-11151 bp Feature: domain Description: DUF1542 Location: 12747-12966 bp Feature: domain Description: DUF1542 Location: 12 747-12 966 bp Feature: domain Description: DUF1542 Location: 12981-13200 bp Feature: domain Description: DUF1542 Location: 12 981-132 00 bp Feature: domain Description: DUF1542 Location: 13212-13431 bp Feature: domain Description: DUF1542 Location: 132 12 -13431 bp Feature: domain Description: DUF1542 Location: 13443-13662 bp Feature: domain Description: DUF1542 Location: 13443-13662 bp Feature: domain Description: DUF1542 Location: 13674-13893 bp Feature: domain Description: DUF1542 Location: 13674-13893 bp Feature: domain Description: DUF1542 Location: 13905-14124 bp Feature: domain Description: DUF1542 Location: 13905-1412 4 bp Feature: domain Description: DUF1542 Location: 14136-14355 bp Feature: domain Description: DUF1542 Location: 14136-14355 bp Feature: domain Description: DUF1542 Location: 14367-14586 bp Feature: domain Description: DUF1542 Location: 14367-14586 bp Feature: domain Description: DUF1542 Location: 14598-14817 bp Feature: domain Description: DUF1542 Location: 14598-14817 bp Feature: domain Description: DUF1542 Location: 14832-15051 bp Feature: domain Description: DUF1542 Location: 14832 -15051 bp Feature: domain Description: DUF1542 Location: 15063-15282 bp Feature: domain Description: DUF1542 Location: 15063-152 82 bp Feature: domain Description: DUF1542 Location: 15294-15513 bp Feature: domain Description: DUF1542 Location: 152 94-15513 bp Feature: domain Description: DUF1542 Location: 15525-15744 bp Feature: domain Description: DUF1542 Location: 1552 5-15744 bp Feature: domain Description: DUF1542 Location: 15756-15978 bp Feature: domain Description: DUF1542 Location: 15756-15978 bp Feature: domain Description: DUF1542 Location: 15990-16209 bp Feature: domain Description: DUF1542 Location: 15990-162 09 bp Feature: domain Description: DUF1542 Location: 16221-16440 bp Feature: domain Description: DUF1542 Location: 162 2 1-16440 bp Feature: domain Description: DUF1542 Location: 16452-16671 bp Feature: domain Description: DUF1542 Location: 16452 -16671 bp Feature: domain Description: DUF1542 Location: 16683-16902 bp Feature: domain Description: DUF1542 Location: 16683-16902 bp Feature: domain Description: DUF1542 Location: 16914-17133 bp Feature: domain Description: DUF1542 Location: 16914-17133 bp Feature: domain Description: DUF1542 Location: 17145-17364 bp Feature: domain Description: DUF1542 Location: 17145-17364 bp Feature: domain Description: DUF1542 Location: 17376-17595 bp Feature: domain Description: DUF1542 Location: 17376-17595 bp Feature: domain Description: DUF1542 Location: 17607-17826 bp Feature: domain Description: DUF1542 Location: 17607-1782 6 bp Feature: domain Description: DUF1542 Location: 17838-18057 bp Feature: domain Description: DUF1542 Location: 17838-18057 bp Feature: domain Description: DUF1542 Location: 18069-18288 bp Feature: domain Description: DUF1542 Location: 18069-182 88 bp Feature: domain Description: DUF1542 Location: 18300-18519 bp Feature: domain Description: DUF1542 Location: 18300-18519 bp Feature: domain Description: DUF1542 Location: 18531-18750 bp Feature: domain Description: DUF1542 Location: 18531-18750 bp Feature: domain Description: DUF1542 Location: 18762-18981 bp Feature: domain Description: DUF1542 Location: 18762 -18981 bp Feature: domain Description: DUF1542 Location: 18996-19215 bp Feature: domain Description: DUF1542 Location: 18996-192 15 bp Feature: domain Description: DUF1542 Location: 19227-19446 bp Feature: domain Description: DUF1542 Location: 192 2 7-19446 bp Feature: domain Description: DUF1542 Location: 19458-19677 bp Feature: domain Description: DUF1542 Location: 19458-19677 bp Feature: domain Description: DUF1542 Location: 19689-19908 bp Feature: domain Description: DUF1542 Location: 19689-19908 bp Feature: domain Description: DUF1542 Location: 19920-20139 bp Feature: domain Description: DUF1542 Location: 1992 0-2 0139 bp Feature: domain Description: DUF1542 Location: 20154-20373 bp Feature: domain Description: DUF1542 Location: 2 0154-2 0373 bp Feature: domain Description: DUF1542 Location: 20385-20604 bp Feature: domain Description: DUF1542 Location: 2 0385-2 0604 bp Feature: domain Description: DUF1542 Location: 20616-20835 bp Feature: domain Description: DUF1542 Location: 2 0616-2 0835 bp Feature: domain Description: DUF1542 Location: 20847-21066 bp Feature: domain Description: DUF1542 Location: 2 0847-2 1066 bp Feature: domain Description: DUF1542 Location: 21081-21300 bp Feature: domain Description: DUF1542 Location: 2 1081-2 1300 bp Feature: domain Description: DUF1542 Location: 21312-21531 bp Feature: domain Description: DUF1542 Location: 2 1312 -2 1531 bp Feature: domain Description: DUF1542 Location: 21543-21765 bp Feature: domain Description: DUF1542 Location: 2 1543-2 1765 bp Feature: domain Description: DUF1542 Location: 21777-21996 bp Feature: domain Description: DUF1542 Location: 2 1777-2 1996 bp Feature: domain Description: DUF1542 Location: 22008-22227 bp Feature: domain Description: DUF1542 Location: 2 2 008-2 2 2 2 7 bp Feature: domain Description: DUF1542 Location: 22239-22461 bp Feature: domain Description: DUF1542 Location: 2 2 2 39-2 2 461 bp Feature: domain Description: DUF1542 Location: 22473-22692 bp Feature: domain Description: DUF1542 Location: 2 2 473-2 2 692 bp Feature: domain Description: DUF1542 Location: 22704-22923 bp Feature: domain Description: DUF1542 Location: 2 2 704-2 2 92 3 bp Feature: domain Description: DUF1542 Location: 22938-23157 bp Feature: domain Description: DUF1542 Location: 2 2 938-2 3157 bp Feature: domain Description: DUF1542 Location: 23169-23388 bp Feature: domain Description: DUF1542 Location: 2 3169-2 3388 bp Feature: domain Description: DUF1542 Location: 23400-23619 bp Feature: domain Description: DUF1542 Location: 2 3400-2 3619 bp Feature: domain Description: DUF1542 Location: 23634-23853 bp Feature: domain Description: DUF1542 Location: 2 3634-2 3853 bp Feature: domain Description: DUF1542 Location: 23865-24084 bp Feature: domain Description: DUF1542 Location: 2 3865-2 4084 bp Feature: domain Description: DUF1542 Location: 24096-24315 bp Feature: domain Description: DUF1542 Location: 2 4096-2 4315 bp Feature: domain Description: DUF1542 Location: 24327-24546 bp Feature: domain Description: DUF1542 Location: 2 432 7-2 4546 bp Feature: domain Description: DUF1542 Location: 24558-24777 bp Feature: domain Description: DUF1542 Location: 2 4558-2 4777 bp Feature: domain Description: DUF1542 Location: 24789-25008 bp Feature: domain Description: DUF1542 Location: 2 4789-2 5008 bp Feature: domain Description: DUF1542 Location: 25020-25239 bp Feature: domain Description: DUF1542 Location: 2 502 0-2 52 39 bp Feature: domain Description: DUF1542 Location: 25251-25470 bp Feature: domain Description: DUF1542 Location: 2 52 51-2 5470 bp Feature: domain Description: DUF1542 Location: 25485-25704 bp Feature: domain Description: DUF1542 Location: 2 5485-2 5704 bp Feature: domain Description: DUF1542 Location: 25716-25935 bp Feature: domain Description: DUF1542 Location: 2 5716-2 5935 bp Feature: domain Description: DUF1542 Location: 25947-26166 bp Feature: domain Description: DUF1542 Location: 2 5947-2 6166 bp Feature: domain Description: DUF1542 Location: 26178-26397 bp Feature: domain Description: DUF1542 Location: 2 6178-2 6397 bp Feature: domain Description: DUF1542 Location: 26412-26631 bp Feature: domain Description: DUF1542 Location: 2 6412 -2 6631 bp Feature: domain Description: DUF1542 Location: 26643-26865 bp Feature: domain Description: DUF1542 Location: 2 6643-2 6865 bp Feature: domain Description: Gram_pos_anchor Location: 26988-27105 bp Feature: domain Description: Gram_pos_anchor Location: 2 6988-2 7105 bp Feature: gene Location: 27655-28752 bp Feature: domain Description: Transposase_mut Location: 28228-28696 bp Feature: domain Description: Transposase_mut Location: 2 82 2 8-2 8696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII, GIIM (pfam08388), YSIRK_signal (TIGR01168), DUF1542 (pfam07564), Gram_pos_anchor (pfam00746), Transposase_mut (pfam00872)