myRT

myRT report for GCA_013781985.1_ASM1378198v1

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Seq: CP056185.1 Citrobacter sp. RHBSTW-01013 chromosome, complete genome (5217381 bp)
Overview 1 RT 1: 2023062-2029263 bp 2 RT 2: 3986181-3991375 bp 3 RT 3: 4476016-4480360 bp Neighborhood of RT #1 [2023062, 2029265] RVT-GII GIIM HTH_Tnp_1 HTH_21 PRK15057 Neighborhood of RT #2 [3986181, 3991386] fruct_sucro_rep RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #3 [4476016, 4480360] YeeA YeeA RVT-UG5 PRK09413 Feature: gene Location: 2023062-2023715 bp Feature: gene Location: 2023998-2024451 bp Feature: gene Location: 2024532-2026040 bp Ori: QLR26510.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024790-2025522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2024790-2025522 bp Feature: domain Description: GIIM Note: maturase Location: 2025597-2025795 bp Feature: domain Description: GIIM Note: maturase Location: 2025597-2025795 bp Feature: gene Location: 2026713-2027398 bp Feature: domain Description: HTH_Tnp_1 Location: 2026725-2026920 bp Feature: domain Description: HTH_Tnp_1 Location: 2026725-2026920 bp Feature: domain Description: HTH_21 Location: 2027124-2027268 bp Feature: domain Description: HTH_21 Location: 20271 24-2027268 bp Feature: gene Location: 2028099-2029265 bp Ori: QLR23671.1 Gene: ugd Feature: domain Description: PRK15057 Location: 2028102-2029263 bp Feature: domain Description: PRK1 5057 Location: 20281 02-2029263 bp Feature: gene Location: 3986181-3987185 bp Ori: QLR25385.1 Feature: domain Description: fruct_sucro_rep Location: 3986202-3987180 bp Feature: domain Description: fruct_sucro_rep Location: 3986202-39871 80 bp Feature: gene Location: 3987321-3987454 bp Feature: gene Location: 3987619-3989127 bp Ori: QLR26600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987877-3988609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987877-3988609 bp Feature: domain Description: GIIM Note: maturase Location: 3988684-3988882 bp Feature: domain Description: GIIM Note: maturase Location: 3988684-3988882 bp Feature: gene Location: 3989800-3990225 bp Feature: domain Description: PHA02517 Location: 3989890-3990226 bp Feature: domain Description: PHA0251 7 Location: 3989890-3990226 bp Feature: gene Location: 3990235-3991386 bp Ori: QLR25386.1 Feature: domain Description: HTH_38 Location: 3990244-3990358 bp Feature: domain Description: HTH_38 Location: 3990244-3990358 bp Feature: domain Description: Tra8 Location: 3990394-3991375 bp Feature: domain Description: Tra8 Location: 3990394-3991 375 bp Feature: gene Location: 4476016-4477950 bp Ori: QLR25817.1 Gene: pglX Feature: domain Description: YeeA Location: 4476655-4477366 bp Feature: domain Description: YeeA Location: 4476655-4477366 bp Feature: domain Description: YeeA Location: 4477522-4477846 bp Feature: domain Description: YeeA Location: 4477522-4477846 bp Feature: gene Location: 4477973-4478437 bp Feature: gene Location: 4478454-4479437 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4478916-4479405 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 447891 6-4479405 bp Feature: gene Location: 4480360-4480681 bp Ori: QLR26612.1 Feature: domain Description: PRK09413 Location: 4480375-4480678 bp Feature: domain Description: PRK0941 3 Location: 4480375-4480678 bp Feature: gene Location: 4479474-4480360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), PRK15057 (UDP-glucose 6-dehydrogenase; Provisional), fruct_sucro_rep (TIGR02417), PHA02517 (putative transposase OrfB; Reviewed), HTH_38 (pfam13936), Tra8 (COG2826), YeeA (COG1002)
RVT-UG5, PRK09413 (IS2 repressor TnpA; Reviewed)